Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j10r
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    26   4.6  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    26   6.1  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    25   8.0  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   8.0  

>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +3

Query: 210 NFHSDPMHTNVILTQVDVMIQLWKDTT*DCLF---GVSKIEMVCFAKLWLA 353
           + HS P H +  LT     I L K     C F   G++ +  VC A  W+A
Sbjct: 37  SIHSIPFHISTHLTSCQANISLLKIVGLHCPFHRRGIASLS-VCVALHWIA 86


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -3

Query: 567 NQQQNQPSYSEIMLSQLPVGYNVGTLMKKIVTR---KDNH--EIYHVQELPINH 421
           N + N   Y+EI      VGY  G+ +K++++    KDN   +I  + +L  NH
Sbjct: 115 NLEHNVKQYAEIASKISAVGYLWGSNIKEVMSNAGFKDNEVFDILLLSDLVFNH 168


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 105 VFMYSKLHELYKHEDLLAYKRPMS*YPKNKQD 10
           V+++S LHE  K  DLL+    +  YP +++D
Sbjct: 343 VYIFSSLHESGKQLDLLSGIAAILTYPVDEED 374


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 279 STIESLHQLVLELHLCAWGRSENYKFHLTDYYPVHNPDQNHPQCDPY 139
           S IE   + VL++   A  + +N K  L  +  +  P   HP   PY
Sbjct: 86  SVIEEGSKDVLDVKAAASQQEDNMKIVLPSFDAIDVPKAYHPSLRPY 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,274
Number of Sequences: 5004
Number of extensions: 70463
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)