Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j10r
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0060 + 20363857-20365359                                         34   0.13 
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833...    30   2.1  
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219...    29   2.7  
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460           29   2.7  
03_06_0185 + 32193769-32194617                                         29   3.6  
08_02_0719 + 20388246-20390756,20391159-20391263                       28   6.3  
08_01_0672 - 5800357-5800451,5801123-5801175,5801289-5801344,580...    28   6.3  
07_01_0343 + 2486556-2486709,2486936-2486994,2487081-2487136,248...    28   6.3  

>03_05_0060 + 20363857-20365359
          Length = 500

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -3

Query: 429 INHVVIIDSTWNQCRGIYADKR-IQKLPTIVLQNRPSQFWRHQKGSPR-WYLSTIESL 262
           + H++++D TW + + +Y +   +Q LP + L++     +   +  PR   LSTIES+
Sbjct: 399 LQHLIVLDGTWAKAQRMYHENPWLQLLPHVKLESDGVSLYSEVRHEPRAGCLSTIESI 456


>06_03_1318 -
           29282562-29282566,29282727-29282810,29282913-29283380,
           29283735-29283917,29284362-29284467,29284627-29284651,
           29284736-29284855,29284920-29284997,29285646-29285774,
           29285976-29285989,29286168-29287944,29288344-29288489,
           29288921-29291029
          Length = 1747

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 629 LMERLFCCFLELRQNLCETYSINNKISLHTQKLCYHN 519
           L E L CCFL++R+   E   +N     +  K CY N
Sbjct: 874 LTEELICCFLDMRRQYLE---LNGLSYCYAMKGCYQN 907


>12_01_0292 +
           2193309-2193338,2193565-2193640,2193744-2195203,
           2195479-2195505,2195794-2196024,2196523-2196692,
           2197278-2197421,2198036-2198083,2198503-2198566
          Length = 749

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 186 YPVHNPDQNHPQCDPY 139
           YP+H P Q HP  DPY
Sbjct: 495 YPMHYPMQPHPHADPY 510


>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
          Length = 515

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 186 YPVHNPDQNHPQCDPY 139
           YP+H P Q HP  DPY
Sbjct: 486 YPMHYPMQPHPHADPY 501


>03_06_0185 + 32193769-32194617
          Length = 282

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 15  VYFSDIKTLVFYRLTNLHVYKVHVTLNT*KQKRIISCHIVQHKDHIEDDFDL 170
           + FSD++       T LH + +   LN+ K    ++ HI +   H   DFD+
Sbjct: 71  ILFSDMEGHSSTYNTELHSFMIMPDLNSPKGPNCLAAHITRTAAHARYDFDI 122


>08_02_0719 + 20388246-20390756,20391159-20391263
          Length = 871

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 285 YLSTIESLHQLVLELHLCAWGRSENYKFHLTDYYPVHNPDQNHPQC 148
           YLS +  LH L++E     +GR +NYK H   +  +    +N   C
Sbjct: 466 YLSDLVDLHVLMVE-DSYKYGRPKNYKVHDLMHQVIQKKAENEDFC 510


>08_01_0672 -
           5800357-5800451,5801123-5801175,5801289-5801344,
           5801590-5801642,5801768-5801903
          Length = 130

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 216 ENYKFHLTDYYPVHNPDQNHPQCDPYVGQYDNLLFFFV 103
           + Y  ++  Y P+++P++  P  D YVG    LL + V
Sbjct: 72  DKYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAV 109


>07_01_0343 +
           2486556-2486709,2486936-2486994,2487081-2487136,
           2487380-2487432,2488401-2488477,2489233-2489326,
           2489551-2489609,2489698-2489753,2489853-2489905,
           2490025-2490119
          Length = 251

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 219 SENYKFHLTDYYPVHNPDQNHPQCDPYVGQYDNLLFFFV 103
           +  Y  ++  Y P++NP++  P  D Y G    LL + V
Sbjct: 192 ASKYGANVDGYSPIYNPEEWSPSGDVYTGGKTGLLLWAV 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,337,281
Number of Sequences: 37544
Number of extensions: 409835
Number of successful extensions: 854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)