Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j10r
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      32   0.52 
SB_27807| Best HMM Match : C2 (HMM E-Value=0)                          31   1.2  
SB_12012| Best HMM Match : DUF327 (HMM E-Value=2)                      29   3.7  
SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)                     28   6.5  
SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)                   28   6.5  
SB_17984| Best HMM Match : DUF662 (HMM E-Value=4.7)                    28   6.5  
SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 33/56 (58%)
 Frame = -3

Query: 426 NHVVIIDSTWNQCRGIYADKRIQKLPTIVLQNRPSQFWRHQKGSPRWYLSTIESLH 259
           N V+ IDSTW Q   I  D R+  +  + ++N  + FWR Q+  P   L+TIE+++
Sbjct: 139 NRVIFIDSTWQQSHKIITDGRLSGIRKVQIENAKTYFWRPQQ-KPNTCLATIEAIY 193



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 684 LAPRDVTVYTYPDIPD 637
           LAP  VT+Y YPD P+
Sbjct: 98  LAPVQVTIYNYPDFPE 113


>SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 621 KVVLLFPGAEAKSVRDLFNQQQNQPSYSEIMLSQLP 514
           KVVLLF G + K  +    +Q+  P Y+E ML  +P
Sbjct: 633 KVVLLFDGQKVKKKKTSTRKQEKNPVYNESMLFDIP 668


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 695 CCXFLLHGMSQCTHIQIFQII--LLMERLFCCFLELRQNLCETYSINNKISLHTQKLCYH 522
           CC  L+ G   CT + +  +   LL+    CC L +   LC T  + + +      +CY 
Sbjct: 225 CCTLLVMGYLCCTLLVMGYLCCTLLVMGYLCCTLLVMGYLCCTLLVMDYLCFTLLVMCYL 284

Query: 521 NCQLVTM 501
            C L+ M
Sbjct: 285 CCTLLVM 291


>SB_27807| Best HMM Match : C2 (HMM E-Value=0)
          Length = 405

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 312 RHQKGSPRWYLSTIESLHQLVLELHLCAWGR 220
           RHQ G   W +  I SL  L + + LC+W R
Sbjct: 12  RHQNGEITWVIPAIASLVSLSMFIILCSWCR 42


>SB_12012| Best HMM Match : DUF327 (HMM E-Value=2)
          Length = 232

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -3

Query: 546 SYSEIMLSQLP-VGYNVGTLMKKIVTRKDNHEIYHVQELPINHVVIIDSTWNQCRGIYAD 370
           S ++ + + LP V +++  L   +++RKD   ++ +  +PI   +    T N  + +  D
Sbjct: 26  SIADSLRNLLPSVPFDISKLEHFVLSRKDPETVFSIPRIPIGFTINCLQTLNLRKAMGID 85

Query: 369 KRIQKL 352
           K I K+
Sbjct: 86  KFIAKI 91


>SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)
          Length = 504

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 169 WIMHRIVICKVEFVIFTP 222
           W  HR+++CKV+F I  P
Sbjct: 48  WTDHRLILCKVKFYIHPP 65


>SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)
          Length = 906

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 169 WIMHRIVICKVEFVIFTP 222
           W  HR+++CKV+F I  P
Sbjct: 148 WTDHRLILCKVKFYIHPP 165


>SB_17984| Best HMM Match : DUF662 (HMM E-Value=4.7)
          Length = 301

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 169 WIMHRIVICKVEFVIFTP 222
           W  HR+++CKV+F I  P
Sbjct: 126 WTDHRLILCKVKFYIHPP 143


>SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 432

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 510 GYNVGTLMKKIVTRKDNHEIYHVQELPINHVVIIDSTWNQCRGIYAD-KRIQKLPTIVLQ 334
           GY+  T  +  +  +  +E     +LP N  + ++ TW+    +++   ++Q+L  + L 
Sbjct: 98  GYDTVTC-RPYLLEETGYESLQTSKLPNNKPIKVEGTWHMVTEVFSILSQLQRLECLNLS 156

Query: 333 NRP 325
           N P
Sbjct: 157 NNP 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,271,966
Number of Sequences: 59808
Number of extensions: 513305
Number of successful extensions: 1290
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)