Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j10r
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    49   4e-06
Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      27   9.9  

>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 27/86 (31%), Positives = 43/86 (50%)
 Frame = -3

Query: 432 PINHVVIIDSTWNQCRGIYADKRIQKLPTIVLQNRPSQFWRHQKGSPRWYLSTIESLHQL 253
           PI  +V++D TW Q   +    +IQ L  + LQ+  + FWR Q   P   L+TIE+++  
Sbjct: 448 PIKRIVVLDCTWFQVGVMQKTPQIQGLQHVSLQSYRTAFWRPQHNVPETGLATIEAIYYS 507

Query: 252 VLELHLCAWGRSENYKFHLTDYYPVH 175
           + E      GR  + +F    Y+  H
Sbjct: 508 LREYQELGLGRKYSGEFDDLLYWFFH 533


>Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical protein
            K04D7.4 protein.
          Length = 1159

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 414  IIDSTWNQCRGIYADKRIQKLPTIVLQNRPSQFWR 310
            ++ S  N+C  ++     QK+ TIV+ N+   FWR
Sbjct: 969  MVGSWGNECEDLWRLTWQQKVQTIVILNQRDSFWR 1003


>Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical
           protein C25F9.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 619 GCFVVSWS*GKICARLIQSTTKSAFILRNYVI-TTASWLQCWNINEKDSYK 470
           G  + +W+  K+C +   + + S  +LRNY++ +  S  +C  IN+ D  K
Sbjct: 624 GRLLRAWTFAKLCRKKAYAMSHSNLLLRNYILESVKSMEEC--INKADIEK 672


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 675 RDVTVYTYPDIPDYPTDGKVVLLFPGAEAKSVRDLFNQQQNQPSYS 538
           R ++  +Y DIP  PT    V   P +       L +QQQN   YS
Sbjct: 643 RALSPVSYNDIPASPTMCAQVFNLPKSTESEHHQLTSQQQNTTHYS 688


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
           protein K04G2.8a protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 675 RDVTVYTYPDIPDYPTDGKVVLLFPGAEAKSVRDLFNQQQNQPSYS 538
           R ++  +Y DIP  PT    V   P +       L +QQQN   YS
Sbjct: 641 RALSPVSYNDIPASPTMCAQVFNLPKSTESEHHQLTSQQQNTTHYS 686


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 675 RDVTVYTYPDIPDYPTDGKVVLLFPGAEAKSVRDLFNQQQNQPSYS 538
           R ++  +Y DIP  PT    V   P +       L +QQQN   YS
Sbjct: 641 RALSPVSYNDIPASPTMCAQVFNLPKSTESEHHQLTSQQQNTTHYS 686


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,519,202
Number of Sequences: 27780
Number of extensions: 397691
Number of successful extensions: 1025
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)