Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j10r
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28040.2 68417.m04023 nodulin MtN21 family protein similar to...    29   3.0  
At4g28040.1 68417.m04022 nodulin MtN21 family protein similar to...    29   3.0  
At5g27460.1 68418.m03279 pentatricopeptide (PPR) repeat-containi...    29   4.0  
At4g23790.1 68417.m03421 expressed protein many other Arabidopsi...    28   7.0  
At4g18320.1 68417.m02717 hypothetical protein                          28   7.0  
At1g66950.1 68414.m07612 ABC transporter family protein similar ...    28   7.0  
At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s...    28   7.0  
At2g32650.2 68415.m03989 expressed protein contains Pfam PF05899...    27   9.2  
At2g32650.1 68415.m03988 expressed protein contains Pfam PF05899...    27   9.2  
At2g32180.1 68415.m03933 expressed protein                             27   9.2  
At1g11330.1 68414.m01301 S-locus lectin protein kinase family pr...    27   9.2  

>At4g28040.2 68417.m04023 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 359

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 285 YLSTIESLHQLVLELHLCAWGRSENYKFHLTD 190
           YL ++     ++L L++  WG+SE+Y+   TD
Sbjct: 292 YLGSLLGALAIILGLYIVLWGKSEDYQEESTD 323


>At4g28040.1 68417.m04022 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 359

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 285 YLSTIESLHQLVLELHLCAWGRSENYKFHLTD 190
           YL ++     ++L L++  WG+SE+Y+   TD
Sbjct: 292 YLGSLLGALAIILGLYIVLWGKSEDYQEESTD 323


>At5g27460.1 68418.m03279 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 491

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/75 (21%), Positives = 33/75 (44%)
 Frame = -3

Query: 273 IESLHQLVLELHLCAWGRSENYKFHLTDYYPVHNPDQNHPQCDPYVGQYDNLLFFFVFMY 94
           I+++HQ+ + +  C W  S N    + +Y+     ++   +   YV     L    + +Y
Sbjct: 409 IDAMHQVFVLMRRCHWRPSHNIVMAIAEYF---EKEEKIEEATAYVRDLHRLGLASLPLY 465

Query: 93  SKLHELYKHEDLLAY 49
             L  +++H    AY
Sbjct: 466 RLLLRMHEHAKRPAY 480


>At4g23790.1 68417.m03421 expressed protein many other Arabidopsis
           putative proteins
          Length = 430

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 111 RIISCHIVQHKDHIEDDFDLDYAQDSNL 194
           +++ CH  Q K HIE +   DYA +++L
Sbjct: 262 KLVGCHNCQEKPHIE-ELGFDYAYNASL 288


>At4g18320.1 68417.m02717 hypothetical protein 
          Length = 320

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 279 STIESLHQLVLELHLCAWGRSENYKFHLTDYYPVHNPDQNHP-QCDPYVGQ 130
           STI+SL   V ++ +  WG + ++ F  T  + V N  +N   + +P+ GQ
Sbjct: 219 STIDSLSPSVDKISIILWGHTLDFTFR-TQNWNVSNTQENDTIEWNPFHGQ 268


>At1g66950.1 68414.m07612 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1454

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -3

Query: 561 QQNQPSYSEIMLSQLPVGYNVGTLMKKIVTRKDNHEIYHVQELPINHVVIID 406
           + N   + E    Q P    V   ++++ ++KD  + ++ +E P N+V + D
Sbjct: 432 RDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSD 483


>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
           similarity to SPL1-Related2 protein [Arabidopsis
           thaliana] GI:6006427; contains Pfam profile PF03110: SBP
           domain
          Length = 1035

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 423 HVVIIDSTWNQCRGIYADKRIQKLPTIVLQNRPSQFWRHQK 301
           +V +  + W Q       K +Q+L  ++LQN PS FWR+ +
Sbjct: 553 YVAMSPAAWEQLE----QKLLQRLG-VLLQNSPSDFWRNAR 588


>At2g32650.2 68415.m03989 expressed protein contains Pfam PF05899:
           Protein of unknown function (DUF861)
          Length = 139

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 598 SRKQQNNLSISRIIWNIWICVHCDIPW 678
           S+K+   L +SR  W++W    C +PW
Sbjct: 53  SQKRLEELGVSR--WSVWKTGKCKLPW 77


>At2g32650.1 68415.m03988 expressed protein contains Pfam PF05899:
           Protein of unknown function (DUF861)
          Length = 139

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 598 SRKQQNNLSISRIIWNIWICVHCDIPW 678
           S+K+   L +SR  W++W    C +PW
Sbjct: 53  SQKRLEELGVSR--WSVWKTGKCKLPW 77


>At2g32180.1 68415.m03933 expressed protein 
          Length = 139

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 598 SRKQQNNLSISRIIWNIWICVHCDIPW 678
           S+K+   L +SR  W++W    C +PW
Sbjct: 53  SQKRLEELGVSR--WSVWKTGKCKLPW 77


>At1g11330.1 68414.m01301 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 840

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 568 E*VSHRFCLSSRKQQNNLSISRIIWNIW 651
           E +S R   SS K++NNL++    W +W
Sbjct: 716 EIISGRRNSSSHKEENNLNLLAYAWKLW 743


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,176,421
Number of Sequences: 28952
Number of extensions: 352787
Number of successful extensions: 816
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)