Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j10f
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    30   0.22 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.8  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   6.3  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   6.3  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    25   8.4  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 344 SACPR-CGKSRMYFCYVCFIPVPA---LEGKIPYCKLPIKV 454
           S+C + CGK RMY  +VC  P  A    + +IP CK P++V
Sbjct: 725 SSCKKECGKRRMYCEHVCQSPCHAGHPCDERIP-CKAPLEV 764


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 148  IVMFKWCYKINNLT 189
            ++++KWC  INNLT
Sbjct: 973  LLVYKWCQGINNLT 986


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
 Frame = +3

Query: 405 YQHLKEKYLTVNYQ*KWILSNTKERLM-VKALQPMLLFLLHGMSQCTHIQIFQII---LL 572
           Y  ++EKY  V +   W L+N    L  + ++ P+L  L + +S  T +  F+ I   L+
Sbjct: 295 YPAVQEKYWNVGFLRYWTLNNIPNFLFALLSIIPILFALFYSISGST-LHSFRSIKSHLV 353

Query: 573 MERLF---GCF 596
           +  L+   GCF
Sbjct: 354 LSALYLYIGCF 364


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 93  KYIILYKYHIFLCLDIVLYCHV 158
           K + LY Y +F+ LD++  C+V
Sbjct: 261 KAVRLYAYQMFMALDLLKQCNV 282


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 457 IHFYW*FTVRYFSFKCWYWN 398
           I F W  TV Y    CW WN
Sbjct: 171 ITFVW-LTVVYCPIACWIWN 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,927
Number of Sequences: 5004
Number of extensions: 43476
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)