Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j10f
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0133 + 22614219-22614651,22614767-22615671,22615918-226162...    28   4.9  
01_01_0795 - 6187518-6188219                                           28   4.9  
10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428...    28   6.5  
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389...    28   6.5  
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174...    28   6.5  
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298     27   8.6  
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923...    27   8.6  

>05_05_0133 +
           22614219-22614651,22614767-22615671,22615918-22616224,
           22616307-22616380
          Length = 572

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 251 PKNRIAKACDDRPFEGLIITNTEPLSSLSSRSACPRC 361
           PK R  K C  +P   L +T   P+SSL++      C
Sbjct: 385 PKRRRIKTCVKKPQNDLELTEENPISSLNNECTFVDC 421


>01_01_0795 - 6187518-6188219
          Length = 233

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +2

Query: 332 LSSRSACPRC-GKS----RMYFCYVCFIPV-PALEGKIPYCKLPIKVDIIKHKGEINGKS 493
           LSSR++CP C GK+     +    V  I V P L G  P   + + V +   KGE+ G S
Sbjct: 149 LSSRASCPVCRGKAAPADELADAIVARIAVTPDLVG--PRVSMSVVVPVEMLKGEMVGAS 206

Query: 494 TAAHAAVLAPRDV 532
           + + AA   P  +
Sbjct: 207 STSRAASAPPEQL 219


>10_07_0177 -
           13841148-13841267,13841569-13841645,13842710-13842860,
           13842942-13843056,13843145-13843236,13843317-13843370,
           13843849-13843935,13844023-13844109,13844191-13844274,
           13844359-13844445,13844793-13845549,13846491-13846648
          Length = 622

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 312 TLNRLVLYLVEVLAHVAASQECTFVMFALFQYQHLKEKYLT---VNYQ*KWILSNTKER 479
           T  RL+    +VL+H+    + +F  F++  Y  L + Y T    +Y   W LS T  R
Sbjct: 228 TPRRLIQVNGDVLSHLDLDSQTSFGTFSVLSYNILADAYATSDAYSYCPTWALSWTYRR 286


>09_04_0237 -
           15936630-15937250,15937457-15937534,15938874-15938973,
           15940414-15942278
          Length = 887

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 365 KSRMYFCYVCFIPVPA-LEGKIP-YCKLPIKVDIIKHKGEINGKSTAAHAAVLA 520
           + RM FCY+C + + A LEGK    C   + V +IK     + + TA++  + A
Sbjct: 622 RCRMVFCYLCGLQIGAVLEGKEKCQCLDNLGVVLIKALCRFSKRRTASYPPIKA 675


>06_01_1173 +
           10014391-10014678,10015478-10017245,10017333-10017436,
           10017632-10017706,10017887-10017918,10019396-10019482,
           10020848-10021294,10021477-10021630,10022203-10022329,
           10022547-10022632,10022719-10022790,10023083-10023286,
           10023732-10024049
          Length = 1253

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 377 YFCYVCFIPVPALEGKIPYCK 439
           +FC+VC +    +E + P+CK
Sbjct: 48  HFCFVCIMAWARVESRCPFCK 68


>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
          Length = 439

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 335 SSRSACPRCGKSRMYFCY 388
           SSR  CPRC      FCY
Sbjct: 30  SSREQCPRCASHDTKFCY 47


>03_02_1025 + 13289146-13289586,13291882-13292087,13292174-13292323,
            13292412-13292545,13292843-13292949,13293031-13293137,
            13293581-13293686,13294098-13294217,13294318-13294474,
            13295163-13295254,13295338-13295582,13295668-13296268,
            13296362-13296457,13296541-13296794,13297622-13297715,
            13299138-13299188
          Length = 986

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
 Frame = +2

Query: 359  CGKSRMYFCYVCFIPVPALEGKIPYCKLPIKVDII--------KHKGEINGKSTAAHAAV 514
            CG S++YFC  CF     + G+I   +L   V I+        + +  +N + T   AAV
Sbjct: 834  CGYSQLYFCR-CFFGHYTVPGRITKKELDTAVGILLPGHIPRAQKRLMVNYEKTQVDAAV 892

Query: 515  LAP 523
            L+P
Sbjct: 893  LSP 895


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,889,748
Number of Sequences: 37544
Number of extensions: 235460
Number of successful extensions: 603
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)