Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j10f
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   2e-23
SB_54448| Best HMM Match : RVT_1 (HMM E-Value=0.096)                   31   0.93 
SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)                 31   0.93 
SB_41510| Best HMM Match : Minor_tail_Z (HMM E-Value=3.5)              31   0.93 
SB_40055| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                  31   0.93 
SB_32337| Best HMM Match : CaMBD (HMM E-Value=5.9)                     31   0.93 
SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                  31   0.93 
SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                   31   0.93 
SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.93 
SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)                  31   0.93 
SB_6390| Best HMM Match : BCL_N (HMM E-Value=8.4)                      31   0.93 
SB_5327| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                   31   0.93 
SB_40509| Best HMM Match : Cyclase (HMM E-Value=8.89965e-42)           29   2.9  
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)            29   3.8  
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  

>SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score =  105 bits (253), Expect = 2e-23
 Identities = 47/92 (51%), Positives = 60/92 (65%)
 Frame = +2

Query: 287 PFEGLIITNTEPLSSLSSRSACPRCGKSRMYFCYVCFIPVPALEGKIPYCKLPIKVDIIK 466
           PF  L I + EPL   + R+ CP+C  SR Y+CY C+  V      +P   LPI VDI+K
Sbjct: 23  PFSDLGIASHEPLRG-AERAPCPKCQTSRKYYCYECYTTVGIERSLVPSVTLPITVDIVK 81

Query: 467 HKGEINGKSTAAHAAVLAPRDVTVYTYPDIPD 562
           H+GE+ GKSTA HAA+LAP  VT+Y YPD P+
Sbjct: 82  HRGELAGKSTATHAAILAPVQVTIYNYPDFPE 113


>SB_54448| Best HMM Match : RVT_1 (HMM E-Value=0.096)
          Length = 343

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525 GMSQCTHIQIFQIILLMERLFGC 593
           G+SQCT I++++ ++L   L+GC
Sbjct: 257 GISQCTKIKVYRAVVLTTLLYGC 279


>SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
          Length = 470

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525 GMSQCTHIQIFQIILLMERLFGC 593
           G+SQCT I++++ ++L   L+GC
Sbjct: 384 GISQCTKIKVYRAVVLTTLLYGC 406


>SB_41510| Best HMM Match : Minor_tail_Z (HMM E-Value=3.5)
          Length = 208

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525 GMSQCTHIQIFQIILLMERLFGC 593
           G+SQCT I++++ ++L   L+GC
Sbjct: 68  GISQCTKIKVYRAVVLTTLLYGC 90


>SB_40055| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 303

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525 GMSQCTHIQIFQIILLMERLFGC 593
           G+SQCT I++++ ++L   L+GC
Sbjct: 94  GISQCTKIKVYRAVVLTTLLYGC 116


>SB_32337| Best HMM Match : CaMBD (HMM E-Value=5.9)
          Length = 289

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525 GMSQCTHIQIFQIILLMERLFGC 593
           G+SQCT I++++ ++L   L+GC
Sbjct: 189 GISQCTKIKVYRAVVLTTLLYGC 211


>SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525 GMSQCTHIQIFQIILLMERLFGC 593
           G+SQCT I++++ ++L   L+GC
Sbjct: 319 GISQCTKIKVYRAVVLTTLLYGC 341


>SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 404

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525 GMSQCTHIQIFQIILLMERLFGC 593
           G+SQCT I++++ ++L   L+GC
Sbjct: 195 GISQCTKIKVYRAVVLTTLLYGC 217


>SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 299

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525 GMSQCTHIQIFQIILLMERLFGC 593
           G+SQCT I++++ ++L   L+GC
Sbjct: 90  GISQCTKIKVYRAVVLTTLLYGC 112


>SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1319

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525  GMSQCTHIQIFQIILLMERLFGC 593
            G+SQCT I++++ ++L   L+GC
Sbjct: 1110 GISQCTKIKVYRAVVLTTLLYGC 1132


>SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
          Length = 425

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525 GMSQCTHIQIFQIILLMERLFGC 593
           G+SQCT I++++ ++L   L+GC
Sbjct: 325 GISQCTKIKVYRAVVLTTLLYGC 347


>SB_6390| Best HMM Match : BCL_N (HMM E-Value=8.4)
          Length = 194

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525 GMSQCTHIQIFQIILLMERLFGC 593
           G+SQCT I++++ ++L   L+GC
Sbjct: 135 GISQCTKIKVYRAVVLTTLLYGC 157


>SB_5327| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 328

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 525 GMSQCTHIQIFQIILLMERLFGC 593
           G+SQCT I++++ ++L   L+GC
Sbjct: 119 GISQCTKIKVYRAVVLTTLLYGC 141


>SB_40509| Best HMM Match : Cyclase (HMM E-Value=8.89965e-42)
          Length = 325

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 553 IWICVHCDIPWSKNSSMGCSAFTINLSFVFDNIHFYW*FTVRY 425
           +W  V C      +S+    +  INLS+ FDN   YW  + R+
Sbjct: 3   LWSVVTCFALVGLSSTAPAPSKWINLSYKFDNTSIYWPGSTRF 45


>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
          Length = 821

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 311 NTEPLSSLSSRSACPRCGKSRMYFCYVCFIPVPALE--GKIPYCKLPIKVDIIKHKGEIN 484
           N +P SS S ++     GKS +     C I +PAL   G  P   LP   +I  ++G+++
Sbjct: 581 NGKPYSSSSYKTKFHASGKSVLSRIVCCVIRIPALPAGGTFPQPLLP--GEIYNYRGKMD 638

Query: 485 GKS 493
            KS
Sbjct: 639 KKS 641


>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1494

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 93   KYIILYKYHIFLCLDIVLYCHV*MV--LQNKQF 185
            KY+++    +F CL I+++C+V  V  L+  QF
Sbjct: 1355 KYMVIAAVLMFFCLSIIIFCYVRAVTALKTAQF 1387


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,757,693
Number of Sequences: 59808
Number of extensions: 300429
Number of successful extensions: 657
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)