Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j10f
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    79   2e-15
Z81533-8|CAB04332.1|  917|Caenorhabditis elegans Hypothetical pr...    30   1.1  

>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 35/80 (43%), Positives = 47/80 (58%)
 Frame = +2

Query: 341 RSACPRCGKSRMYFCYVCFIPVPALEGKIPYCKLPIKVDIIKHKGEINGKSTAAHAAVLA 520
           +S CP C  +R YFCY C  P+P +    P  KLP  VDI+KH  E N KS+A H  ++A
Sbjct: 344 KSTCPGCKSNRKYFCYDCRTPMPGVF--TPTVKLPCAVDIVKHPMEKNSKSSALHCKIVA 401

Query: 521 PRDVTVYTYPDIPDYPTDGK 580
           P    V+ YP++ DY  D +
Sbjct: 402 PDQTRVFDYPNVHDYSQDSE 421


>Z81533-8|CAB04332.1|  917|Caenorhabditis elegans Hypothetical
           protein F36G9.13 protein.
          Length = 917

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 82  VVFKNTSFYINITYFYV*ILYCIVMFKWCYKINNLTLNYHRIREIYSLALY 234
           VV  N++    +T   +  +  I+ F WC++  N    YH++R  Y+   Y
Sbjct: 742 VVDTNSTLVCTVTVLIIGSILGIIAFLWCWRDQNCI--YHKLRRRYAKPTY 790


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,090,454
Number of Sequences: 27780
Number of extensions: 239063
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)