Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j10f
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing ... 30 1.3
At1g56280.2 68414.m06470 drought-responsive family protein conta... 29 2.4
At1g56280.1 68414.m06469 drought-responsive family protein conta... 29 2.4
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa... 28 4.1
At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing ... 28 4.1
At4g38000.1 68417.m05369 Dof-type zinc finger domain-containing ... 27 9.5
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro... 27 9.5
At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family ... 27 9.5
At1g21340.1 68414.m02668 Dof-type zinc finger domain-containing ... 27 9.5
At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family ... 27 9.5
>At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing
protein
Length = 253
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 314 TEPLSSLSSRSACPRCGKSRMYFCY 388
T P+S + CPRC S FCY
Sbjct: 20 TVPISDQQEQLPCPRCDSSNTKFCY 44
>At1g56280.2 68414.m06470 drought-responsive family protein contains
an AT-AC intron 3, potentially contains a frameshift. An
alternate model provides a translation more consistent
with homologous proteins but lacks the AT-AC intron;
similar to drought-induced mRNA, Di19 [Arabidopsis
thaliana] gi|469110|emb|CAA55321
Length = 112
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +2
Query: 347 ACPRCGKSRMYFCYVCFIPVP-ALEGK---IPYCKLPIKVDIIKHK 472
ACP C +S C I LE K P C L + VDI+ HK
Sbjct: 36 ACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHK 81
>At1g56280.1 68414.m06469 drought-responsive family protein contains
an AT-AC intron 3, potentially contains a frameshift. An
alternate model provides a translation more consistent
with homologous proteins but lacks the AT-AC intron;
similar to drought-induced mRNA, Di19 [Arabidopsis
thaliana] gi|469110|emb|CAA55321
Length = 200
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +2
Query: 347 ACPRCGKSRMYFCYVCFIPVP-ALEGK---IPYCKLPIKVDIIKHK 472
ACP C +S C I LE K P C L + VDI+ HK
Sbjct: 36 ACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHK 81
>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 532
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 550 WICVHCDIPWSKNSSMGCSAFTI 482
++CV C +PW ++SM C F I
Sbjct: 333 FVCVDCGVPW--HASMSCEEFQI 353
>At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing
protein DNA binding protein - Hordeum
vulgare,PID:e1334094
Length = 247
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 347 ACPRCGKSRMYFCY 388
+CPRCG S FCY
Sbjct: 26 SCPRCGSSNTKFCY 39
>At4g38000.1 68417.m05369 Dof-type zinc finger domain-containing
protein Zn finger protein BBF2aO -Nicotiana
tabacum,PID:e246547
Length = 246
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 305 ITNTEPLSSLSSRSACPRCGKSRMYFCY 388
I N EP + CPRC FCY
Sbjct: 28 INNKEPSPATQPVLKCPRCDSVNTKFCY 55
>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe};
contains Pfam profile PF03169: OPT oligopeptide
transporter protein
Length = 753
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 478 LSFVFDNIHFYW*FTVRYFSFKCWYWNKA 392
LSF + + Y ++ Y SF CW W ++
Sbjct: 231 LSFTYYIVPGYLFPSISYLSFVCWIWTRS 259
>At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family
protein similar to SP|Q9Y2Y1 DNA-directed RNA
polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase III C11 subunit) {Homo sapiens}; contains
Pfam profiles PF02150: RNA polymerases M/15 Kd subunit,
PF01096: Transcription factor S-II (TFIIS)
Length = 106
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +2
Query: 302 IITNTEPLSSLSSRSACPRCGKSRMYF 382
++T + ++ + + CPRCG + YF
Sbjct: 52 VVTKDDIPTAAETEAPCPRCGHDKAYF 78
>At1g21340.1 68414.m02668 Dof-type zinc finger domain-containing
protein contains similaity to DNA-binding protein
GB:X66076 GI:517257 from [Zea mays]
Length = 260
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 347 ACPRCGKSRMYFCY 388
ACPRC S FCY
Sbjct: 39 ACPRCASSNTKFCY 52
>At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family
protein similar to SP|O13896 DNA-directed RNA
polymerases III 12.5 kDa polypeptide (EC 2.7.7.6)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF02150: RNA polymerases M/15 Kd subunit, PF01096:
Transcription factor S-II (TFIIS)
Length = 106
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +2
Query: 302 IITNTEPLSSLSSRSACPRCGKSRMYF 382
++T + ++ + + CPRCG + YF
Sbjct: 52 VVTKDDIPTAAETEAPCPRCGHDKAYF 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,044,513
Number of Sequences: 28952
Number of extensions: 207629
Number of successful extensions: 544
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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