Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j09r
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 137 1e-33
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 35 0.010
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 29 0.68
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 28 1.6
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 27 3.6
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 6.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 6.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 6.4
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 137 bits (332), Expect = 1e-33
Identities = 81/219 (36%), Positives = 116/219 (52%), Gaps = 1/219 (0%)
Frame = -3
Query: 662 LPVSLGLGVCGRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGF 483
LP+ +G G TAY G I +PK GET GQ+AK MG V+G
Sbjct: 132 LPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGS 191
Query: 482 AGTDEKCQWLIQEAGFDHVANYKTADIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRT 303
G+DEK + + ++G+D V NYK L P G+D YF+NVGGE VL +M
Sbjct: 192 VGSDEKFK-ICLDSGYDSVFNYKKESPFKALPRLCPKGIDIYFENVGGETMDAVLENMNL 250
Query: 302 FGRVAVCGAISTYNETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNL-AW 126
GR+ CGAIS YN N ++K + ++ K L ++GF V + E + +
Sbjct: 251 QGRIIFCGAISQYNNPNPYRVKNLGM---VLVKSLTIQGFIVANILPQYQEQYFEEMPKL 307
Query: 125 VKSGQLKYKEHLTEGFESVIDAFIGLFRGDNIGKSIVKV 9
+ G++KYK + +G ES +AFIG+ +G N GK+IVK+
Sbjct: 308 IAEGKIKYKCDVYDGLESAPEAFIGMLQGKNSGKTIVKI 346
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 35.1 bits (77), Expect = 0.010
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 515 AKIMGCV-VIGFAGTDEKCQWLIQEAGFDHVANYKTADIPTFLKGTAPNGVDCYFDNVGG 339
A+I+G VIG E+ + Q+ GF + + +D+P + NGVDC + G
Sbjct: 241 AQILGASKVIGIEVVPERIELARQKFGFTVIDRNEVSDVPKKIMELVSNGVDCAIEASGF 300
Query: 338 ELSSVVL 318
S+ +L
Sbjct: 301 RFSTSIL 307
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 29.1 bits (62), Expect = 0.68
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Frame = +3
Query: 288 RNSTKSSHVR*NYTAELSTHIIKIAVYTVGSSTF----EECRYVSSFIICY---VIKASF 446
R+S +SH T + +I + +Y++ ++T + + S ++ Y I S
Sbjct: 286 RSSEVASHTLTYLTCVANKQLILVFLYSLINTTLRLRPDSWKASYSTLVPYNDSSIALSK 345
Query: 447 LNQPLAFFICACEPYNYTTHYFRNLTNMGPHSSCRTRYYYSFTRFWL 587
L + P+ T YFR N+ P ++ +Y F+R L
Sbjct: 346 LTSQILLLFLDHTPHETTVEYFRQRLNLSPGAAIENQYRLYFSRLQL 392
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 353 DNVGGELSSVVLSHMRTFGRVAVCGAISTYNE 258
D V G L+ ++ H RV CG+ YN+
Sbjct: 330 DGVYGSLNCILFDHQHPVARVLKCGSRFVYND 361
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 83 GFESVIDAFIGLFRGDNIGKSIVK 12
GF+ +I++ +F DN+GK+ +K
Sbjct: 372 GFDGIINSLKNIFEEDNLGKTSLK 395
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 411 SFIICYVIKASFLNQPLAFFICACEPYNYTTHYFRNLTNM 530
SF I V+KA A P NY+THY + L+N+
Sbjct: 180 SFDIANVLKAGKKLLGSASRDYDVNPANYSTHYLQQLSNL 219
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 610 YAVFPTLPQTPRP 648
Y V PTLP+TP+P
Sbjct: 1593 YGVKPTLPETPKP 1605
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 610 YAVFPTLPQTPRP 648
Y V PTLP+TP+P
Sbjct: 1593 YGVKPTLPETPKP 1605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,848
Number of Sequences: 5004
Number of extensions: 68828
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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