Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j09r
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)             134   9e-32
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)            55   7e-08
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   54   9e-08
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            34   0.14 
SB_59535| Best HMM Match : PDCD9 (HMM E-Value=3.8e-05)                 29   2.9  
SB_9149| Best HMM Match : Lipase_GDSL (HMM E-Value=0.51)               29   5.1  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_6974| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score =  134 bits (323), Expect = 9e-32
 Identities = 83/219 (37%), Positives = 113/219 (51%), Gaps = 5/219 (2%)
 Frame = -3

Query: 653 SLGLGVCGRVGNTAYFGFSQICQPKPGE--TXXXXXXXXXXXXXXGQIAKIMGC-VVIGF 483
           SL LG+CG    T+     +     PG+  T              GQIAKI GC  ++G 
Sbjct: 132 SLALGLCGLTALTSLIALQERGHIVPGQNQTVVVTGAAGACGSAAGQIAKIFGCGKLVGI 191

Query: 482 AGTDEKCQWLIQEAGFDHVANYKTAD-IPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMR 306
            G++EKCQ+ I+E GFD   NYK  D +   L+   P G+D YFDNVGGE+S+ ++  M 
Sbjct: 192 CGSEEKCQY-IKELGFDSSINYKQVDNMAEELRKHCPQGIDVYFDNVGGEISNEIIRLMN 250

Query: 305 TFGRVAVCGAISTYNETNADKLKATVVQPSIVSKQ-LKVEGFQVNRFADRNMEGIQKNLA 129
               V +CG ISTYN+              IV+KQ +  E F V  F+        +   
Sbjct: 251 KNSHVIICGQISTYNQDIPYPNPLPQDVQEIVTKQNITRERFLVLDFSPLIPAARAQLEV 310

Query: 128 WVKSGQLKYKEHLTEGFESVIDAFIGLFRGDNIGKSIVK 12
           WVK G+LK +E + EG E+V  AF+ +  G NIGK +VK
Sbjct: 311 WVKEGKLKNRETVEEGLENVAKAFLSMMSGGNIGKQVVK 349


>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
          Length = 676

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
 Frame = -3

Query: 455 LIQEAGFDHVANYKTADIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGA 276
           L +  G D   NYKT  +   L    P G+D  ++++GGE+    ++ + T GR+ V G 
Sbjct: 140 LEKSIGCDRPINYKTESLDKVLNKEYPKGIDVIYESIGGEIFDTCVNRLATKGRIIVIGF 199

Query: 275 ISTY-NETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNLAWVKSGQLKYK 99
           I+ Y ++   +  K   + P ++ K   +  F +  +         + ++ +++GQL+  
Sbjct: 200 ITAYKSQLGFNPSKTGTLLPKLLMKSGSLRTFMLFNYLSDMPTVFPRLISMLETGQLRIS 259

Query: 98  EHLTEGFESVIDAFIGL 48
             +  G  S    F GL
Sbjct: 260 --IDRGESSPRGPFCGL 274


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 33/127 (25%), Positives = 52/127 (40%)
 Frame = -3

Query: 626 VGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWLIQ 447
           V  TA++ F ++   +PG                 Q+AKI GC  +G  G   K  + ++
Sbjct: 136 VALTAWYAFFELAHTRPGAWVLVHSAAGGVGSMLVQMAKIAGCHAVGVVGAGHKIDF-VR 194

Query: 446 EAGFDHVANYKTADIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGAIST 267
             G DHV +    D+    K   P+G    FD  G        +H+   G++ +  A+ T
Sbjct: 195 SLGCDHVIDKSAQDLWQEAKVICPDGFSAVFDANGVATLKQSYAHLAPGGKLVIYAAV-T 253

Query: 266 YNETNAD 246
             E  AD
Sbjct: 254 LGEQEAD 260


>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = -3

Query: 653 SLGLGVCGRVGNTAYFGFSQICQ---PKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGF 483
           SLG      VG T +  +  +C     KPGET               QIA+  G  VIG 
Sbjct: 372 SLGFSEGANVGITYFTAYRALCHRLGAKPGETVLVHGASGGVGTAAVQIARAYGMHVIGT 431

Query: 482 AGTDEKCQWLIQEAGFDHVANYKTADIPT-FLKGTAPNGVD 363
           AG+  K + L+++AG  HV N++  +     L+ T   G D
Sbjct: 432 AGS-SKGEELVRQAGAHHVFNHRELNYTQGILEATDGQGPD 471


>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
 Frame = -3

Query: 521 QIAKIMGCVVIGFAGTDEKCQWLIQEAGFDHVANYKTADIPTFLKGTAPNGVDCYFDNVG 342
           QI K +  V + F    E     IQ  G  H  +Y+  D    ++  +P+GVD   D +G
Sbjct: 196 QICKSVEGVTV-FGTASENKHEAIQAQGVTHPIDYRKEDYVKKVREISPDGVDLVLDPLG 254

Query: 341 GELSSVVLSHMRTFGRVAVCGAISTYNETNADKLKATVVQPS-IVSKQLKVEGFQVNRFA 165
           G  +      ++  G +   G  +  N+           QPS ++S    V GF + R  
Sbjct: 255 GSETKRCYDLLKPMGALIHYGN-AAENKGMFKWFSGASFQPSKMMSDNATVCGFSILRLF 313

Query: 164 DRN 156
           +++
Sbjct: 314 NQH 316


>SB_59535| Best HMM Match : PDCD9 (HMM E-Value=3.8e-05)
          Length = 362

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -3

Query: 311 MRTFGRVAVCGAISTYNETNADKLKATVVQPSIVSKQLKVEG--FQVNRFADRNMEGIQK 138
           M TF R+ V  A   +     + L+  +    I++  +++    FQ+N    R+ EG+ K
Sbjct: 246 MFTFARL-VAEATCNHGYQMGEDLEEPLTGQCIMTNGIRLSFLCFQLNTLDLRSDEGV-K 303

Query: 137 NLAWVKSGQLKYK 99
           N+ W+KSG   Y+
Sbjct: 304 NMVWLKSGVQMYE 316


>SB_9149| Best HMM Match : Lipase_GDSL (HMM E-Value=0.51)
          Length = 604

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 145 MPSIFLSANLFTWNPSTFNCLL 210
           +P++F+SA LF W P    C+L
Sbjct: 146 IPAVFISAELFNWVPRNEACVL 167


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -2

Query: 567  CSSIGCGRSCGVP--CWSN-CENNGLC 496
            C     G++C +P  C+ N CENNG+C
Sbjct: 2036 CEPSHTGKNCQLPSPCFRNPCENNGVC 2062


>SB_6974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 489 YNYTTHYFRNLTNMGPHSSCRTRYYYS 569
           YNYT HY  N TN   +  C    +Y+
Sbjct: 51  YNYTLHYEPNTTNKLKNRQCNNIIWYN 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,096,106
Number of Sequences: 59808
Number of extensions: 503766
Number of successful extensions: 1220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)