Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j09r
         (733 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1386|AAF50475.2|  491|Drosophila melanogaster CG7476-PA...    29   4.9  
AE014296-1385|AAO41271.1|  475|Drosophila melanogaster CG7476-PB...    29   4.9  
AY113256-1|AAM29261.1|  199|Drosophila melanogaster AT14658p pro...    29   6.5  

>AE014296-1386|AAF50475.2|  491|Drosophila melanogaster CG7476-PA,
           isoform A protein.
          Length = 491

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 396 CRYVSSFIICYVIKASFLNQPLAFFICACEPYNYTTHYFRNLTNM 530
           C  VS FI C ++    LN         C P  Y++H+FR  +N+
Sbjct: 256 CCIVSRFIQCLIMILDHLN----LLNGICSPAGYSSHFFRMASNL 296


>AE014296-1385|AAO41271.1|  475|Drosophila melanogaster CG7476-PB,
           isoform B protein.
          Length = 475

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 396 CRYVSSFIICYVIKASFLNQPLAFFICACEPYNYTTHYFRNLTNM 530
           C  VS FI C ++    LN         C P  Y++H+FR  +N+
Sbjct: 240 CCIVSRFIQCLIMILDHLN----LLNGICSPAGYSSHFFRMASNL 280


>AY113256-1|AAM29261.1|  199|Drosophila melanogaster AT14658p
           protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 151 KAFRKTWLGSKAVN*STRNILLKASNQSSMHLSGCSEVTTLE 26
           KA R+  L  KAV    RN+ L A NQ  + LSG +++  +E
Sbjct: 53  KARRELHLKDKAVKKLGRNLRLDAMNQIPVSLSGMTKMLVVE 94


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,426,255
Number of Sequences: 53049
Number of extensions: 748121
Number of successful extensions: 1763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)