Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j09f
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    47   2e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.4  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    25   8.5  

>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
 Frame = +3

Query: 204 LAEAIYFSVDPYQRMKLGN------VYPCDM----IGGQIARVIESKNTEYPVGTLVMGH 353
           L + IY SVDPY RM++ +      + P ++        +A+V++S   +Y  G  V+  
Sbjct: 47  LLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFV 106

Query: 354 FGWRTHTITKPENEKLCQQKPYLYKLPDFEHLPVSLGLGVCGRVGNTAYFGFSQICQPKP 533
            GW  +T    +     Q     YKLP  + +      G  G    TAY G   I +PK 
Sbjct: 107 SGWEEYTFVSKQALGFLQPINNPYKLPLIDFV------GSLGMPSQTAYCGLKHIGKPKA 160

Query: 534 GETXXXXXXXXXXXXXXXQIAK 599
           GET               Q+AK
Sbjct: 161 GETIYISAASGAVGQMAGQLAK 182


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 499  YAVFPTLPQTPRP 461
            Y V PTLP+TP+P
Sbjct: 1593 YGVKPTLPETPKP 1605


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 499  YAVFPTLPQTPRP 461
            Y V PTLP+TP+P
Sbjct: 1593 YGVKPTLPETPKP 1605


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 370  IQSLNQRMKSSVNKNPTCINYLT 438
            +QSLN+  +SS++K     NYLT
Sbjct: 1640 VQSLNEHAESSLSKAERSKNYLT 1662


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 388 RMKSSVNKNPTCINYLT 438
           +  SS  KNP+CIN +T
Sbjct: 90  KQPSSTEKNPSCINKMT 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,822
Number of Sequences: 5004
Number of extensions: 51240
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)