Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j09f
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787 66 3e-11
12_01_0756 + 6869100-6869327,6869943-6870123,6870233-6870399,687... 62 3e-10
06_03_0679 - 23464009-23464381,23464804-23464886,23466537-234667... 57 1e-08
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 56 2e-08
12_01_0760 + 6910325-6910558,6911305-6911455,6911949-6912115,691... 54 1e-07
01_06_1628 + 38745964-38746480,38747116-38747282,38747325-387474... 54 1e-07
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 49 2e-06
12_01_0764 + 6934570-6934726,6935150-6935316,6935408-6935490,693... 48 8e-06
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 31 0.93
07_01_0229 - 1672126-1673976,1674427-1675404 30 1.6
03_06_0562 + 34732027-34733121 29 3.8
03_02_0788 - 11187617-11187688,11187988-11188251 28 5.0
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 27 8.7
03_03_0011 - 13716864-13716968,13717102-13717153,13717588-137177... 27 8.7
>04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787
Length = 345
Score = 65.7 bits (153), Expect = 3e-11
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Frame = +3
Query: 105 KKIIVVNPFVGVPKHNDFDIVXXXXXXXXXXX------FLAEAIYFSVDPYQRMKL---- 254
KKI++ N G PK +D ++V L + +Y S DPY R ++
Sbjct: 6 KKIVLRNHVTGFPKESDMELVAATGAAPSRVPEGTDGAVLVKNLYLSCDPYMRGRMSSHD 65
Query: 255 GNVYPCDMIGGQIA-----RVIESKNTEYPVGTLVMGHFGWRTHTITKPENEKLCQQKPY 419
G+ ++G I +V++S + + G LV G GW +++ K + L +
Sbjct: 66 GSYVDAFVVGEAITGYGVGKVVDSSHPGFKAGDLVWGMTGWEEYSLIKDPSRAL-----F 120
Query: 420 LYKLPDFEHLPVSLGLGVCGRVGNTAYFGFSQICQPKPGE 539
+ PD LP+S G+ G G TAY GF +IC P+ GE
Sbjct: 121 AIRHPD---LPLSYYTGLLGMAGFTAYVGFHEICAPREGE 157
>12_01_0756 +
6869100-6869327,6869943-6870123,6870233-6870399,
6870523-6870605,6870716-6871094
Length = 345
Score = 62.1 bits (144), Expect = 3e-10
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Frame = +3
Query: 93 MVIAKKIIVVNPFVGVPKHNDFDIVXXXXXXXXXXX---FLAEAIYFSVDPYQRMKLGN- 260
+V +++I+ G+P +D ++V + + +Y S DPY R ++
Sbjct: 4 VVTNRRVILKRYVTGLPSEDDMEVVTAKTTLAVPAGSEAVMVKNLYVSCDPYMRGRMTRH 63
Query: 261 ---VYPCDMIGGQIA------RVIESKNTEYPVGTLVMGHFGWRTHTITKPENEKLCQQK 413
Y D + G++ +V+ S + ++ G LV G GW +T+ K
Sbjct: 64 EVPSYVPDYVPGEVITNCGVMKVVSSGHPDFKDGDLVWGVTGWEEYTLVN-------NPK 116
Query: 414 PYLYKLPDFEHLPVSLGLGVCGRVGNTAYFGFSQICQPKPGE 539
PYL+K+ ++ P+S GV G G TAY GF ++ +PK G+
Sbjct: 117 PYLHKI-NYPEFPLSYYTGVLGIAGLTAYGGFFEVSKPKKGD 157
>06_03_0679 -
23464009-23464381,23464804-23464886,23466537-23466703,
23466821-23467007,23467093-23467311
Length = 342
Score = 56.8 bits (131), Expect = 1e-08
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Frame = +3
Query: 93 MVIAKKIIVVNPFV-GVPKHNDFDI-VXXXXXXXXXXXFLAEAIYFSVDPYQ--RMK--- 251
M + + + V V G+P +DF++ L +Y SVDPYQ RMK
Sbjct: 1 MEVESRYVAVRHHVEGLPSEDDFEVKAARVRWWPESGEVLVRNLYLSVDPYQLNRMKRRS 60
Query: 252 -----LGNVYPCDMIGGQIA-RVIESKNTEYPVGTLVMGHFGWRTHTITKPENEKLCQQK 413
+ + P + I A V+ S EY G +V G GW +T+ +P L
Sbjct: 61 ASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRPSPGVL---- 116
Query: 414 PYLYKLPDFEHLPVSLGLGVCGRVGNTAYFGFSQICQPKPGE 539
+ KL + LP+S L G G TAY G ++ +P+ GE
Sbjct: 117 --MSKLAASDDLPLSHHLSALGTSGMTAYAGLYEVGRPEAGE 156
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 56.4 bits (130), Expect = 2e-08
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 16/161 (9%)
Frame = +3
Query: 105 KKIIVVNPFVGVPKHNDFDIVXXXXXXXXXXXFLAEAI-----YFSVDPYQRMKLGN--- 260
K++I+ G+ +D ++V +EA+ Y S DPY R ++
Sbjct: 8 KRVILKRYVTGLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCDPYMRNRMTRHEV 67
Query: 261 -VYPCDMIGGQIA------RVIESKNTEYPVGTLVMGHFGWRTHT-ITKPENEKLCQQKP 416
Y D I G++ RVI S + ++ G LV G GW +T I PE+
Sbjct: 68 PSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVINNPES-------- 119
Query: 417 YLYKLPDFEHLPVSLGLGVCGRVGNTAYFGFSQICQPKPGE 539
L+++ + LP+S G+ G G TAY GF ++ +PK GE
Sbjct: 120 -LFRI-NHPKLPLSYYTGILGMPGLTAYAGFFEVSKPKKGE 158
>12_01_0760 +
6910325-6910558,6911305-6911455,6911949-6912115,
6912227-6912309,6912395-6912773
Length = 337
Score = 53.6 bits (123), Expect = 1e-07
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Frame = +3
Query: 216 IYFSVDPYQRMKLGN----VYPCDMIGGQIARVIESKNTEYPVGTLVMGHFGWRTHT-IT 380
+Y S DPY R ++ + Y D + G+ VI S + ++ G LV G GW +T I
Sbjct: 50 LYVSCDPYMRNRMTHHELPSYIPDFVPGE---VISSGHLDFKAGDLVWGMTGWEEYTVIN 106
Query: 381 KPENEKLCQQKPYLYKLPDFEHLPVSLGLGVCGRVGNTAYFGFSQICQPKPGE 539
PE+ L+K+ + LP+S G+ G G TAY GF + +PK GE
Sbjct: 107 NPES---------LFKI-NHPELPLSYYTGILGMPGLTAYAGFFDVPKPKKGE 149
>01_06_1628 +
38745964-38746480,38747116-38747282,38747325-38747440,
38747718-38748114
Length = 398
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +3
Query: 291 IARVIESKNTEYPVGTLVMGHFGWRTHT-ITKPENEKLCQQKPYLYKLPDFEHLPVSLGL 467
+ARV++S + + G +V G GW ++ I +PE QQ +P+S L
Sbjct: 120 VARVVDSTHPGFSAGDIVSGMTGWEEYSLIDRPEQLSKIQQSD----------IPLSYHL 169
Query: 468 GVCGRVGNTAYFGFSQICQPKPGE 539
G+ G G TAY GF +IC PK GE
Sbjct: 170 GLLGMPGFTAYAGFYEICSPKKGE 193
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 49.2 bits (112), Expect = 2e-06
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = +3
Query: 276 MIGGQIARVIESKNTEYPVGTLVMGHFGWRTHT-ITKPENEKLCQQKPYLYKLPDFEHLP 452
M+ +++V++S + + G LV G GW ++ IT+PE L+K+ + LP
Sbjct: 92 MVNFGVSKVVDSTHPVFAAGDLVWGLCGWEEYSLITQPET---------LHKI-NHPDLP 141
Query: 453 VSLGLGVCGRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXXQIAK 599
+S GV G G TAY F ++ +PK GET Q+AK
Sbjct: 142 LSYYTGVLGVTGLTAYAAFFEVGKPKKGETVFVSAASGAVGQIVGQLAK 190
>12_01_0764 +
6934570-6934726,6935150-6935316,6935408-6935490,
6935588-6935966
Length = 261
Score = 47.6 bits (108), Expect = 8e-06
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 297 RVIESKNTEYPVGTLVMGHFGWRTHT-ITKPENEKLCQQKPYLYKLPDFEHLPVSLGLGV 473
+VI S + ++ G LV G GW +T I PE L+K+ + LP+S G+
Sbjct: 2 KVISSGHQDFKAGDLVWGITGWEEYTVINNPET---------LFKI-NHPELPLSYYTGI 51
Query: 474 CGRVGNTAYFGFSQICQPKPGE 539
G G TAY GF ++ +PK GE
Sbjct: 52 LGMPGLTAYGGFFEVAKPKKGE 73
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 255 LVSFFDKDR--H*SILLLLETHFLVIRKVPLELYQNH 151
L S F K R H +L LLE+HFL+ P+E+ NH
Sbjct: 729 LKSLFGKARVGHFEMLKLLESHFLMSEVSPVEIDDNH 765
>07_01_0229 - 1672126-1673976,1674427-1675404
Length = 942
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 365 SPAKVTHNQCPNRILGIFTFNNSGNLSTNHITRIYI 258
+P+ + P + LG+F ++N+GNLS NH+ + I
Sbjct: 387 APSSNFSDALPAQYLGLFNYSNNGNLS-NHVFAVEI 421
>03_06_0562 + 34732027-34733121
Length = 364
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 53 IQSHQITETFCRKYGYSEKNNSSKPICW 136
+Q H+ E FC+ G+ E+ S P CW
Sbjct: 257 VQEHEGDEEFCKSLGFDER---SDPQCW 281
>03_02_0788 - 11187617-11187688,11187988-11188251
Length = 111
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 304 LKVKIPSILLGHWLWV-TLAGEHIQSL-NQRMKSSVNKNPTCINYLTLNIYLCLWALVSA 477
L +PS GH+ L G H Q +R+ S+V + P + + + LW LV+A
Sbjct: 20 LAALLPSSAAGHYAGAPALRGWHWQHWWPERLGSAVRRWPELVQDFSPVVDAVLWGLVTA 79
Query: 478 VE 483
+E
Sbjct: 80 IE 81
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 167 NYIKIIMFGYTNKWVYYYYFFR 102
+Y+ +I+FG W+Y YF R
Sbjct: 734 SYLPVILFGIYMSWIYLRYFQR 755
>03_03_0011 -
13716864-13716968,13717102-13717153,13717588-13717719,
13718289-13718491,13718584-13718695,13719308-13719474,
13720059-13720119,13720527-13720645,13720911-13720943
Length = 327
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 167 NYIKIIMFGYTNKWVYYYYF 108
+YI II+FG W+Y YF
Sbjct: 186 SYIPIILFGIYLSWIYLRYF 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,195,551
Number of Sequences: 37544
Number of extensions: 289953
Number of successful extensions: 693
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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