Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j09f
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   9e-04
SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)                       30   1.2  
SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  

>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
 Frame = +3

Query: 204 LAEAIYFSVDPYQRMKL------GNVYPCD----MIGGQIARVIESKNTEYPVGTLV-MG 350
           L + +Y SVDPY R ++      G + P +    + GG + RV ESK+ ++ VG +V   
Sbjct: 43  LVKTLYLSVDPYMRSRMNEGGSVGYIAPFEIGKVLSGGGVGRVEESKSDKFSVGDIVECF 102

Query: 351 HFGWRTHTITKPENEKLCQ-QKPYLYKLPDFEHLPVSLGLGVCGRVGNTAYFGFSQICQP 527
            F W+ + +   +++ L + +   + + P       SL LG+CG    T+     +    
Sbjct: 103 GFPWQHYCVLPEDHQSLRKVESEIVCENP-------SLALGLCGLTALTSLIALQERGHI 155

Query: 528 KPG--ETXXXXXXXXXXXXXXXQIAK 599
            PG  +T               QIAK
Sbjct: 156 VPGQNQTVVVTGAAGACGSAAGQIAK 181


>SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)
          Length = 291

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 318 TEYPVGTLVMGHFGWRTHTITKPENEKLCQQKP 416
           T YP G  + GH+ WR      PEN   C   P
Sbjct: 174 TAYPTGLAITGHY-WRFPVYASPENVMGCNPVP 205


>SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 348 GHFGWRTHTITKPENEKLCQQKPYLYKLPDFEHLPVSLGLGVCGRVGNTAYFGFSQICQP 527
           GH    T    KPE  +    + ++++    EH+ V L L +  R+ +    G  +  QP
Sbjct: 189 GHSNGTTFVALKPETGEQAALQEFMHQKLQEEHMVVQLLLSLRNRLPDNQVGGSCEAFQP 248

Query: 528 KPGET 542
             G T
Sbjct: 249 NAGTT 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,471,615
Number of Sequences: 59808
Number of extensions: 370742
Number of successful extensions: 974
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)