Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j09f
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61948-6|AAB03142.1|  497|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical p...    27   7.7  

>U61948-6|AAB03142.1|  497|Caenorhabditis elegans Hypothetical
           protein C46A5.1 protein.
          Length = 497

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = +3

Query: 246 MKLGNVYPCDMIGGQIARVIESKNTEYPVGTLVMGHFGWRTHTITKPENEKLCQQKPYLY 425
           +++G     ++  G   +V+   N  Y     V  +  W  H     + +++ Q + YL 
Sbjct: 339 IRVGEFKQVELGKGWNLKVLSVSNGTYKTFIHVHHYKNW-PHGSIPSDVKQIWQVQSYLR 397

Query: 426 KLPDFEHLPVSLGLGVCGRVGNTAYF 503
           K  D  H PV + +  CGR G  A F
Sbjct: 398 KYTD-GHPPVYMSMSGCGRAGTFALF 422


>Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical
           protein M01B2.6 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 362 PAKVTHNQCPNRILGIFTFNNSGNLSTNHITRIYIA*F 249
           P K   N C  RI+G ++  +   ++ N ++++  A F
Sbjct: 83  PIKTEENTCSKRIIGYYSGTSDSEITINQVSKLTHAIF 120


>U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical
           protein F55G1.15 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 155 IIMFGYTNKWVYYYYF-FRYNHIFDKRFQ*FDVIVLQSTMNRLLF 24
           I+M   T KW++Y+Y+   ++ + D  +   D I L + + ++ F
Sbjct: 40  IVMIMSTLKWLFYFYYTIDFDELVDDHYMTNDYINLAANICQVFF 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,853,992
Number of Sequences: 27780
Number of extensions: 287299
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)