Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j08f
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 175 1e-44
03_01_0290 + 2246791-2247027,2248089-2248346 175 1e-44
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879... 31 0.44
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 30 1.0
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 30 1.4
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 30 1.4
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 30 1.4
01_06_1794 - 39919363-39920025 29 1.8
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999 29 1.8
09_01_0142 - 2103224-2103864,2104264-2104399 29 2.4
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 2.4
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 3.1
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 4.1
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 4.1
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 28 4.1
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 28 4.1
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284... 28 4.1
01_01_0990 + 7847066-7847478,7847713-7848679 28 4.1
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 28 5.5
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 5.5
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 28 5.5
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 27 7.2
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 7.2
10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007 27 9.6
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983... 27 9.6
08_02_0830 - 21617485-21618198 27 9.6
06_03_0846 - 25328224-25330613,25330716-25330794 27 9.6
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 9.6
02_01_0030 - 183836-183903,183986-184453,184526-184604,184698-18... 27 9.6
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 175 bits (427), Expect = 1e-44
Identities = 83/158 (52%), Positives = 111/158 (70%)
Frame = +2
Query: 38 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 217
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 218 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 397
TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++F R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120
Query: 398 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFV 511
A G+ ++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ARGEVISTKRQPQGPKPGFMVEGATLET-VTPIPYDVV 157
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 175 bits (427), Expect = 1e-44
Identities = 83/158 (52%), Positives = 110/158 (69%)
Frame = +2
Query: 38 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 217
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 218 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 397
TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++ R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120
Query: 398 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFV 511
A G+ ++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLET-VTPIPYDVV 157
>04_04_0823 +
28383798-28383864,28384475-28384877,28387388-28387932,
28387978-28388594
Length = 543
Score = 31.5 bits (68), Expect = 0.44
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +1
Query: 163 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC*ACQ 327
+++W C SK YA QS WK S++ C RCDC SR+D H+ C A
Sbjct: 117 EKKWKCDKCSKRYAVQS-DWKAHSKI---CGTREYRCDCGTLFSRRDSFITHRAFCDA-- 170
Query: 328 ALQVQTRLP 354
Q +RLP
Sbjct: 171 LAQESSRLP 179
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 30.3 bits (65), Expect = 1.0
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 218 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 397
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 409 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 462
Query: 398 AAGKTVNLKRQPAP-PKAAHIVSGTEKPVLLAPI 496
+Q +P P + IVS + P +API
Sbjct: 463 GGTLLRQHPQQVSPAPGRSTIVSSSNAP-RIAPI 495
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 29.9 bits (64), Expect = 1.4
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +1
Query: 151 HCRH--QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQY 309
+CR +++W C SK YA QS WK S+ C RCDC SR+D H+
Sbjct: 115 YCRKHGEKKWRCDKCSKRYAVQS-DWKAHSKT---CGTREYRCDCGTLFSRRDSFITHRA 170
Query: 310 PC*ACQALQVQTRLP 354
C A Q R+P
Sbjct: 171 FCDA--LAQENARMP 183
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 29.9 bits (64), Expect = 1.4
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = +1
Query: 163 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQAL 333
+++W C SK YA QS WK ++ RCDC SR+D H+ C A
Sbjct: 121 EKKWKCDKCSKKYAVQS-DWKAHTKTCGSREY-RCDCGTLFSRRDSFITHRAFCDALAEE 178
Query: 334 QVQTRLP*ESQRE*EATEGSQGCRQDRQP 420
+ R + + T S G + P
Sbjct: 179 SAKARAAPPPPADEDGTSASAGAPPPQAP 207
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 163 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 315
+++W C SK YA QS WK +++ C RCDC SRKD H+ C
Sbjct: 139 EKKWKCDRCSKKYAVQS-DWKAHTKI---CGTKEYRCDCGTIFSRKDSFITHRAFC 190
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 359 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 496
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
Length = 764
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Frame = +1
Query: 118 LHVHESVQSWRHCRHQRQWCSSKGYAT------QSIPWKDRSRVQRDCSCSRCDCQQACS 279
LH H+ R C+ R S T K ++ CSCS+ D +CS
Sbjct: 232 LHTHQVTDENRQCKSARGMLSHLDNYTGLNSDHAGKKLKGHLSIEEPCSCSKDDTDSSCS 291
Query: 280 RKDYTEAHQY 309
D A Y
Sbjct: 292 LADEHHARHY 301
>09_01_0142 - 2103224-2103864,2104264-2104399
Length = 258
Score = 29.1 bits (62), Expect = 2.4
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 218 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 397
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 124 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 177
Query: 398 AAGKTVNLKRQPAP-PKAAHIVSGTEKPVLLAPI 496
+ +Q +P P +VS + P +API
Sbjct: 178 GSMLLRQHPQQVSPAPGRPTVVSSSNAP-RIAPI 210
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 145 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 246
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 137 YKVGDIVDIRGNGAVQKGMPHKVY 208
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 386 KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 514
++A AA + L+ + A G E+P L P+PYE+ A
Sbjct: 77 RKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPYEYPA 119
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 145 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 240
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 178 SSKGYATQSIPWKDRSRVQRDC--SCSRCDCQQACSRKDYTE 297
+S G + Q P + R + Q D SC RC C+++ K Y E
Sbjct: 436 TSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKSKCLKLYCE 477
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 232 QRDCSCSRCDCQQACSRKDYTEAHQYPC 315
Q C C C C + RKD A +Y C
Sbjct: 391 QDTCGCMMCKCIYSDQRKDIVLADKYTC 418
>02_01_0391 +
2838471-2838794,2838892-2839028,2841155-2841631,
2841719-2841999,2843009-2843051,2844094-2844148,
2845771-2845824,2846282-2846314,2846574-2846621,
2846885-2846950,2847286-2847426
Length = 552
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -1
Query: 334 GVLDMLNTDIDAL-RYNPSANTLVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDV 158
GV+++ ++ +A RYN +A+ L + TES+ S + C++ + + + T
Sbjct: 239 GVIEIPYSEEEACCRYNETASILKELITESVGSEAIGVDCIADFRRLLRQMESMTSVCQE 298
Query: 157 YNVSN 143
Y +SN
Sbjct: 299 YIISN 303
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 163 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 315
+++W C SK YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 98 EKKWKCDKCSKRYAVQS-DWKAHSKT---CGTREYRCDCGTLFSRRDSFITHRAFC 149
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 393 PRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLSH 500
P L RP R P+ PT + +++ PS+L L H
Sbjct: 347 PNLQERPMDRRPELGPMPFPTQAWQMQAPSHLPLLH 382
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 323 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 430
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 163 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 315
+++W C SK YA S WK S+V C RCDC SR+D H+ C
Sbjct: 148 EKKWKCDKCSKRYAVHS-DWKAHSKV---CGTREYRCDCGTLFSRRDSFITHRAFC 199
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 188 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKC 340
G P G T VY+V AH+ GVIV+ + I V+ ++H C
Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVSGSEDRSAKIWKDGICVQSIEHPGC 187
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 288 LYRSASISVLSMSSTPSADKTSLRESKRM 374
+Y+SA++ V + SS P+ADK + + ++M
Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438
>10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007
Length = 272
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 218 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKH--SKCRQD 349
T R NV +IV VRGRI+P I ++H + +C+++
Sbjct: 138 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQEN 183
>09_02_0487 +
9828283-9829354,9830436-9830580,9830863-9831153,
9831984-9832032
Length = 518
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 362 VKENERLLKEAKAA--GKTVNLKRQPAPPKAAH-IVSGTEKPVLLAP 493
V+ +++ LK +A G N R P PP+A++ I G P+LL+P
Sbjct: 93 VQPSKKFLKSLEACIPGNCTN-GRLPTPPQASNDIEEGANMPLLLSP 138
>08_02_0830 - 21617485-21618198
Length = 237
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 332 SKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAA 451
S CR D ++R N+R L A +A + ++ ++P P K A
Sbjct: 149 SPCRADSVERWDSNKRPLSRASSAERW-DINKKPRPKKDA 187
>06_03_0846 - 25328224-25330613,25330716-25330794
Length = 822
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 215 KTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRV 316
+TG ++V A+ V+ +R GR++ R+N+R+
Sbjct: 158 RTGE-FDVRANVYAVVAKRRDGGRLVLPRLNLRI 190
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 92 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 256
F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
>02_01_0030 -
183836-183903,183986-184453,184526-184604,184698-185183
Length = 366
Score = 27.1 bits (57), Expect = 9.6
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Frame = +2
Query: 92 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNK 271
F T G IP Y+ G + + +G + G PHK+ R+Y++ + A+G +
Sbjct: 114 FSTDGEIP-------YREGQSIGVIPDGIDKNGKPHKL------RLYSIASSAIGDFADS 160
Query: 272 RVRGRIIPKRI--NIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPK 445
+ + + + N + E VK C +FL +K + K G P P
Sbjct: 161 KTVSLCVKRLVYTNDQGEIVK-GVC-SNFLCDLKPG----SDVKITGPVGKEMLMPKDPN 214
Query: 446 AAHIVSGT 469
A I+ GT
Sbjct: 215 ATIIMLGT 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,153,411
Number of Sequences: 37544
Number of extensions: 318973
Number of successful extensions: 1192
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -