Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j06r
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27020.1 68418.m03223 hypothetical protein                          28   3.8  
At3g09560.2 68416.m01136 lipin family protein contains Pfam prof...    28   5.0  
At3g09560.1 68416.m01135 lipin family protein contains Pfam prof...    28   5.0  
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro...    27   6.6  
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR...    27   8.7  
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa...    27   8.7  

>At5g27020.1 68418.m03223 hypothetical protein 
          Length = 164

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 307 KLLLGKASYITRLGNMTWHDTKVSKKDLGMDKDFPMRSFVKKLKDMSGMVISV 465
           K+ L K S ITR         K  KK+  M +DF  R  V ++K M+ ++  V
Sbjct: 7   KIKLPKPSEITRRHKKEADMGKKIKKEENMKRDFIRRRMVFRVKKMTSVISGV 59


>At3g09560.2 68416.m01136 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 904

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 348 EYDMARYQSVQ-EGLGDGQGFSDEVIC*KIKGYV 446
           EY  AR+ ++  E  GD QG   EV+   I G++
Sbjct: 166 EYGSARFDNLNVESYGDSQGSDSEVVLVSIDGHI 199


>At3g09560.1 68416.m01135 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 904

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 348 EYDMARYQSVQ-EGLGDGQGFSDEVIC*KIKGYV 446
           EY  AR+ ++  E  GD QG   EV+   I G++
Sbjct: 166 EYGSARFDNLNVESYGDSQGSDSEVVLVSIDGHI 199


>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
            very low similarity to SP|Q40863 Late embryogenesis
            abundant protein EMB8 from Picea glauca; contains Pfam
            profile PF02517 CAAX amino terminal protease family
            protein
          Length = 1805

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 379  WTLWYRAMSYSLTV*CTKLSLTTICLPVIYSSWKQFNPSPAVRLVSVELLYL 224
            W L  RA+ +   V      +    LP +  +W   NPS    L SV  LY+
Sbjct: 1518 WPLLKRAVGFIGMVLVLWSPVVIPLLPTLLQNWSTSNPSRVAELASVVGLYV 1569


>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1190

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 60  Y*KNSISLGLFRFFDDLRIPRLNLLESQMESLP 158
           Y K+S S   + F D L +  LNL+   +ES+P
Sbjct: 787 YRKDSASFQCYSFSDFLWLTELNLINLNIESIP 819


>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 525

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
 Frame = +3

Query: 69  NSISLGLFRFFDDLRIPRLNLLESQMESLPR--ERPAVISHMCDQ*PELIGSAQRYSSST 242
           N  S G+FRF+D  R  RL++     E L    ++   +S    +  E +  + + S   
Sbjct: 400 NLFSSGMFRFYDQHRDMRLDIDNMSYEELLALGDKMGTVSTALSE--EALSRSLKQSIYQ 457

Query: 243 ETNRTAG------EGLNC--FQEEYITGRQI 311
           ET+ T        + + C   QEEY+ G ++
Sbjct: 458 ETDETGSISLYKDDDIKCSICQEEYVDGDEL 488


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,836,622
Number of Sequences: 28952
Number of extensions: 247595
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)