Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j06f
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25619| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  30   1.6  
SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  

>SB_25619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = -3

Query: 345 QRYSSSTETNRTAGEGLNCFQEEYITGRQI-VVRESFVHYTVREYDMARY-QSVQEGLGD 172
           Q+Y  S ET R   EGLN  ++ +   + I VV ++F  +T+    M  Y +   +G+GD
Sbjct: 163 QKYPDSLETTRVWTEGLNVSKKCFAIRKHIFVVVQAFKEWTLCFEAMEMYLEDQNKGVGD 222

Query: 171 GQGFSDEVIC 142
            + + + + C
Sbjct: 223 IESYMERLEC 232


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 410  LVSDRLLSATCVTNDLSS*VPLKDTAAPRKPI 315
            LVSDR    TC+ N+L   +P  +TA  R  I
Sbjct: 2327 LVSDRCFVVTCLVNELCKPIPATNTAGYRPKI 2358


>SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 133 NFLTNDLIGKSLSIP--KSFLDTLVSCH 210
           N +TND +GKS+S P  K  L   VSCH
Sbjct: 421 NCMTNDTLGKSVSTPVIKDSLSRDVSCH 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,257,122
Number of Sequences: 59808
Number of extensions: 349850
Number of successful extensions: 911
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)