Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j06f
(599 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC093879-1|AAH93879.1| 818|Homo sapiens protocadherin gamma sub... 31 4.1
BC093877-1|AAH93877.1| 818|Homo sapiens protocadherin gamma sub... 31 4.1
AF152521-1|AAD43781.1| 818|Homo sapiens protocadherin gamma B5 ... 31 4.1
AF152334-1|AAD43728.1| 923|Homo sapiens protocadherin gamma B5 ... 31 4.1
BC130333-1|AAI30334.1| 793|Homo sapiens protocadherin beta 7 pr... 30 5.4
BC130331-1|AAI30332.1| 793|Homo sapiens protocadherin beta 7 pr... 30 5.4
BC098574-1|AAH98574.1| 793|Homo sapiens protocadherin beta 7 pr... 30 5.4
AL834254-1|CAD38929.1| 647|Homo sapiens hypothetical protein pr... 30 5.4
AK222678-1|BAD96398.1| 793|Homo sapiens protocadherin beta 7 pr... 30 5.4
AK222560-1|BAD96280.1| 793|Homo sapiens protocadherin beta 7 pr... 30 5.4
AF217750-1|AAK51617.1| 793|Homo sapiens protocadherin-beta7 pro... 30 5.4
AF152500-1|AAD43761.1| 793|Homo sapiens protocadherin beta 7 pr... 30 5.4
AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor i... 30 7.1
AB033020-1|BAA86508.1| 575|Homo sapiens KIAA1194 protein protein. 29 9.4
>BC093879-1|AAH93879.1| 818|Homo sapiens protocadherin gamma
subfamily B, 5 protein.
Length = 818
Score = 30.7 bits (66), Expect = 4.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 328 GAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEES 474
G LSGT ELR VT DN R + ++L+E P + +++ S
Sbjct: 217 GGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVS 265
>BC093877-1|AAH93877.1| 818|Homo sapiens protocadherin gamma
subfamily B, 5 protein.
Length = 818
Score = 30.7 bits (66), Expect = 4.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 328 GAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEES 474
G LSGT ELR VT DN R + ++L+E P + +++ S
Sbjct: 217 GGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVS 265
>AF152521-1|AAD43781.1| 818|Homo sapiens protocadherin gamma B5
short form protein protein.
Length = 818
Score = 30.7 bits (66), Expect = 4.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 328 GAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEES 474
G LSGT ELR VT DN R + ++L+E P + +++ S
Sbjct: 217 GGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVS 265
>AF152334-1|AAD43728.1| 923|Homo sapiens protocadherin gamma B5
protein.
Length = 923
Score = 30.7 bits (66), Expect = 4.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 328 GAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEES 474
G LSGT ELR VT DN R + ++L+E P + +++ S
Sbjct: 217 GGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVS 265
>BC130333-1|AAI30334.1| 793|Homo sapiens protocadherin beta 7
protein.
Length = 793
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 286 EAVQPFTSCAIGFRGAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIV 465
E + F+ G + SGT +R LV V DN+ R + + + E P S +V
Sbjct: 203 EEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVPENSPVGSMVV 262
Query: 466 EESEK 480
S +
Sbjct: 263 SVSAR 267
>BC130331-1|AAI30332.1| 793|Homo sapiens protocadherin beta 7
protein.
Length = 793
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 286 EAVQPFTSCAIGFRGAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIV 465
E + F+ G + SGT +R LV V DN+ R + + + E P S +V
Sbjct: 203 EEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVPENSPVGSMVV 262
Query: 466 EESEK 480
S +
Sbjct: 263 SVSAR 267
>BC098574-1|AAH98574.1| 793|Homo sapiens protocadherin beta 7
protein.
Length = 793
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 286 EAVQPFTSCAIGFRGAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIV 465
E + F+ G + SGT +R LV V DN+ R + + + E P S +V
Sbjct: 203 EEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVPENSPVGSMVV 262
Query: 466 EESEK 480
S +
Sbjct: 263 SVSAR 267
>AL834254-1|CAD38929.1| 647|Homo sapiens hypothetical protein
protein.
Length = 647
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 286 EAVQPFTSCAIGFRGAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIV 465
E + F+ G + SGT +R LV V DN+ R + + + E P S +V
Sbjct: 57 EEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVPENSPVGSMVV 116
Query: 466 EESEK 480
S +
Sbjct: 117 SVSAR 121
>AK222678-1|BAD96398.1| 793|Homo sapiens protocadherin beta 7
precursor variant protein.
Length = 793
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 286 EAVQPFTSCAIGFRGAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIV 465
E + F+ G + SGT +R LV V DN+ R + + + E P S +V
Sbjct: 203 EEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVPENSPVGSMVV 262
Query: 466 EESEK 480
S +
Sbjct: 263 SVSAR 267
>AK222560-1|BAD96280.1| 793|Homo sapiens protocadherin beta 7
precursor variant protein.
Length = 793
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 286 EAVQPFTSCAIGFRGAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIV 465
E + F+ G + SGT +R LV V DN+ R + + + E P S +V
Sbjct: 203 EEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVPENSPVGSMVV 262
Query: 466 EESEK 480
S +
Sbjct: 263 SVSAR 267
>AF217750-1|AAK51617.1| 793|Homo sapiens protocadherin-beta7
protein.
Length = 793
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 286 EAVQPFTSCAIGFRGAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIV 465
E + F+ G + SGT +R LV V DN+ R + + + E P S +V
Sbjct: 203 EEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVPENSPVGSMVV 262
Query: 466 EESEK 480
S +
Sbjct: 263 SVSAR 267
>AF152500-1|AAD43761.1| 793|Homo sapiens protocadherin beta 7
protein.
Length = 793
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 286 EAVQPFTSCAIGFRGAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIV 465
E + F+ G + SGT +R LV V DN+ R + + + E P S +V
Sbjct: 203 EEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVPENSPVGSMVV 262
Query: 466 EESEK 480
S +
Sbjct: 263 SVSAR 267
>AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor
interacting protein splice variant a protein.
Length = 2161
Score = 29.9 bits (64), Expect = 7.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 303 EGLNCFQEEYITGRQIVVRESFVHYTVREYDMARYQSVQEGLGDGQGF 160
E N QE R + F HYTV YD S+ +G+G G +
Sbjct: 610 EVANRSQESKQESRSDKAKRLFRHYTVGSYDSFDAPSLMDGIGPGSDY 657
>AB033020-1|BAA86508.1| 575|Homo sapiens KIAA1194 protein protein.
Length = 575
Score = 29.5 bits (63), Expect = 9.4
Identities = 13/60 (21%), Positives = 32/60 (53%)
Frame = +1
Query: 364 RSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEESEKA*ANGIFLIRCLLLSCEKYCS 543
R L+ ++ DN ++ +T ++ PR+ +++E ++ +F + C + C+KY +
Sbjct: 165 RRLLNYLLDNLSGTAKR---ITTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT 221
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,959,625
Number of Sequences: 237096
Number of extensions: 1662999
Number of successful extensions: 3078
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3078
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -