Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j06f
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    28   4.4  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    28   4.4  
AL032635-1|CAA21600.1|  382|Caenorhabditis elegans Hypothetical ...    28   4.4  

>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = +1

Query: 340 SLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIV 465
           SL+ +  +  ++  + DN+ +  ++ +++T+ E  PR SQI+
Sbjct: 560 SLNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQII 601


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = +1

Query: 340 SLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIV 465
           SL+ +  +  ++  + DN+ +  ++ +++T+ E  PR SQI+
Sbjct: 560 SLNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQII 601


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
           protein FMI-1 protein.
          Length = 2596

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = +1

Query: 340 SLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIV 465
           SL+ +  +  ++  + DN+ +  ++ +++T+ E  PR SQI+
Sbjct: 560 SLNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQII 601


>AL032635-1|CAA21600.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2A.1 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 187 LDTLVSCHVIFPNRVMYEAFPNNNLPAGNIFFLEAVQPFTSCAI 318
           ++T  S   + P+ ++Y  F N+N P  +IFF +A +  T   +
Sbjct: 318 MNTASSRSWMVPDWLIYRKFTNSNHPNSDIFFSDAQEILTDMCV 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,692
Number of Sequences: 27780
Number of extensions: 264463
Number of successful extensions: 596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)