Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j05r
(791 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_15591| Best HMM Match : AlaDh_PNT_N (HMM E-Value=0.3) 34 0.15
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19) 30 2.5
SB_46109| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_35420| Best HMM Match : Not3 (HMM E-Value=6) 28 7.5
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 28 10.0
>SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 47.2 bits (107), Expect = 2e-05
Identities = 27/76 (35%), Positives = 40/76 (52%)
Frame = -2
Query: 748 THNSIGNTLFPNGKGVQKVKQLITASMAIIKGNTVWKDAMKIEQVTDESETPNRPIYAMA 569
T+N+ N +F +G Q +Q+ A+M I+KG T M+I+ RP +A+
Sbjct: 81 TNNTFFNRVFGSGNASQS-RQIGNAAMTIVKGQTTSAGVMEIKG------EEGRPTFALN 133
Query: 568 SMEWGAFRDTLAKKDK 521
+ WGAFRDT DK
Sbjct: 134 GVHWGAFRDTAESYDK 149
>SB_15591| Best HMM Match : AlaDh_PNT_N (HMM E-Value=0.3)
Length = 204
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Frame = -2
Query: 694 VKQLITASMAIIKGNTVWKDAMKIEQVTDE---SETPNRPIYAMAS-MEWGAFRD--TLA 533
+K ++T S + G DAMKI+QVT E S+T +P+Y + +++ +D TL
Sbjct: 117 IKIVLTGSGKVAHGAKEMLDAMKIKQVTPENYLSKTYTQPVYTLIDVLDYNKRKDGQTLG 176
Query: 532 KKDKY 518
K D Y
Sbjct: 177 KYDFY 181
>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3474
Score = 31.5 bits (68), Expect = 0.81
Identities = 26/115 (22%), Positives = 53/115 (46%)
Frame = +2
Query: 32 FHIKILLVDFYNCISIRFFRCDLDGTCKNWLWIRVCLYSAPTFRHKVGV*VTVSAQKYTQ 211
F I V+F+ I I ++ D+ G + + + +Y F+ +GV TV ++ T+
Sbjct: 3011 FASMIFFVNFFILILIHYY--DI-GRKEQFAMYGLGMYIVDRFKEAMGVGKTVIPREPTE 3067
Query: 212 GWYLMVHCNILRFNFEIASSKAQFFRCQALWI*NLRLVKLPSRFGGRNKEPFSFY 376
+ C++LR+ + + + +RC+ + + VK P G+ K S +
Sbjct: 3068 FDNIRQQCHLLRYMLKSRAFRQMEYRCEQIL---SKSVKAPQSPNGKVKTKCSLF 3119
>SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.5 bits (68), Expect = 0.81
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -2
Query: 688 QLITASMAIIKGNTVWKDAMKIEQVTDESETPNRPIYAMASMEWGAFRDTLAKKDKYWFY 509
+++ A A+I+GN D I TP Y+ SM WG D + +KY +
Sbjct: 201 EVVCAIYAVIRGNIHEMDIASIV-------TPTSRFYSFLSMTWGIMSDVDIESEKYRYL 253
Query: 508 GPLR 497
G R
Sbjct: 254 GNAR 257
>SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)
Length = 672
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Frame = +3
Query: 567 DAIA*IGRLGVSDSSVTCSIFMASF-HTVFPLMIAI-EAVIN---------CLTFCTPLP 713
D I RL S V S+F+ HT P ++ + E ++N C+ FC+P P
Sbjct: 392 DEIGLFDRLMYISSPVNASLFVYCLGHTGLPFIVLVGEGLVNSPLEVIAPCCIIFCSPTP 451
Query: 714 FG 719
FG
Sbjct: 452 FG 453
>SB_46109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/80 (27%), Positives = 33/80 (41%)
Frame = -2
Query: 388 KRPEVKRKWFFVSSTEAAGQLDQTKILNPECLTSKELCFRTCDFKIKTQNVAMNHQIPAL 209
K + K KW + G ++ K+LN + T RT D + QN+A N Q P
Sbjct: 161 KLGQTKLKWQLQADAVCGGSKEKDKVLNHDAATD-----RTLDCNDQQQNMA-NQQTPQN 214
Query: 208 SIFLGRNSYSYTDFVSEGWR 149
+ G+ +GWR
Sbjct: 215 N--CGKKVIERNSDAYDGWR 232
>SB_35420| Best HMM Match : Not3 (HMM E-Value=6)
Length = 392
Score = 28.3 bits (60), Expect = 7.5
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = -2
Query: 511 YGPLREYAAYIFNGYKSSLNWNCSGTIKYT----PPCVGCTNCTAKRPEVKRKWFFVSST 344
Y PL A Y +NGY + G Y+ PP G N A++P ++R FF
Sbjct: 315 YQPLAGAATYPYNGYHRAYPVMTQGYTSYSSQSAPP--GGPN-YARQPLIERVEFFAEHD 371
Query: 343 EAAGQLDQTKILN 305
+ A L ++ +N
Sbjct: 372 DLALSLPNSRFVN 384
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 145 IKTNSDPEPIFARTIEITPKETDRDTVIEIDKEDFDMKPI 26
+K+NS+ PI + EITP + I K ++ PI
Sbjct: 1025 VKSNSEISPIVKSSSEITPNVKSSSEITPIVKSSSEITPI 1064
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,294,683
Number of Sequences: 59808
Number of extensions: 550223
Number of successful extensions: 2813
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2813
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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