Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j05r
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 378 SGLLAVQLVHPTHGGV 425
           S +LA++L HP HG +
Sbjct: 350 SAILAMRLSHPLHGNL 365


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 189 TVTHTPTLCLKVGAE*RQTRIQSQFLHVPSRSHLK 85
           T+  TP+ C +        +  SQ    P  +HLK
Sbjct: 357 TLERTPSKCSQTSVHYSNGQTHSQLCPTPRSTHLK 391


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 469 YKSSLNWNCSGTIKYTPPCVGCTNCT 392
           YKS++    +G + + PP +  ++CT
Sbjct: 127 YKSNVLIYPNGDVLWVPPAIYQSSCT 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,017
Number of Sequences: 438
Number of extensions: 4459
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)