Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j05f
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    30   0.013
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    30   0.013
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    30   0.013
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    30   0.013
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    30   0.013
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           30   0.013
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    30   0.013
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    29   0.029
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   4.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   5.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   5.8  

>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = -2

Query: 516 PSGNTPTGNMFA*SFRLNNPVTVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCTTSTC 337
           P  +TP+ +    S  L +P++VS   P  PAT  AS   N+S+ +    S    T+ST 
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTAS--QNLSSPA----SSTSSTSSTE 180

Query: 336 KPPNNSNGSQ 307
           K   N+N S+
Sbjct: 181 KAGTNNNNSK 190


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = -2

Query: 516 PSGNTPTGNMFA*SFRLNNPVTVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCTTSTC 337
           P  +TP+ +    S  L +P++VS   P  PAT  AS   N+S+ +    S    T+ST 
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTAS--QNLSSPA----SSTSSTSSTE 180

Query: 336 KPPNNSNGSQ 307
           K   N+N S+
Sbjct: 181 KAGTNNNNSK 190


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = -2

Query: 516 PSGNTPTGNMFA*SFRLNNPVTVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCTTSTC 337
           P  +TP+ +    S  L +P++VS   P  PAT  AS   N+S+ +    S    T+ST 
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTAS--QNLSSPA----SSTSSTSSTE 180

Query: 336 KPPNNSNGSQ 307
           K   N+N S+
Sbjct: 181 KAGTNNNNSK 190


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = -2

Query: 516 PSGNTPTGNMFA*SFRLNNPVTVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCTTSTC 337
           P  +TP+ +    S  L +P++VS   P  PAT  AS   N+S+ +    S    T+ST 
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTAS--QNLSSPA----SSTSSTSSTE 180

Query: 336 KPPNNSNGSQ 307
           K   N+N S+
Sbjct: 181 KAGTNNNNSK 190


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = -2

Query: 516 PSGNTPTGNMFA*SFRLNNPVTVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCTTSTC 337
           P  +TP+ +    S  L +P++VS   P  PAT  AS   N+S+ +    S    T+ST 
Sbjct: 83  PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTAS--QNLSSPA----SSTSSTSSTE 136

Query: 336 KPPNNSNGSQ 307
           K   N+N S+
Sbjct: 137 KAGTNNNNSK 146


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = -2

Query: 516 PSGNTPTGNMFA*SFRLNNPVTVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCTTSTC 337
           P  +TP+ +    S  L +P++VS   P  PAT  AS   N+S+ +    S    T+ST 
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTAS--QNLSSPA----SSTSSTSSTE 180

Query: 336 KPPNNSNGSQ 307
           K   N+N S+
Sbjct: 181 KAGTNNNNSK 190


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = -2

Query: 516 PSGNTPTGNMFA*SFRLNNPVTVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCTTSTC 337
           P  +TP+ +    S  L +P++VS   P  PAT  AS   N+S+ +    S    T+ST 
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTAS--QNLSSPA----SSTSSTSSTE 180

Query: 336 KPPNNSNGSQ 307
           K   N+N S+
Sbjct: 181 KAGTNNNNSK 190


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 0.029
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = -2

Query: 516 PSGNTPTGNMFA*SFRLNNPVTVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCTTSTC 337
           P  +TP+ +    S  L +P++VS   P  PAT  ++   N+S+ +    S    T+ST 
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPAT--STTSQNLSSPA----SSTSSTSSTE 180

Query: 336 KPPNNSNGSQYFSNS 292
           K   N+N S+   +S
Sbjct: 181 KAGTNNNNSKSSQSS 195


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 107 GLISSNCFVLFWQTSLFF 54
           GL+ +N F L W  ++ F
Sbjct: 109 GLVVANAFFLLWTPAVIF 126


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 435 PSPPATIIASVPLNVSTISFAFPSEAVCTTSTCKPPNN 322
           P P  +   ++PL  +     +PS ++  +S   P NN
Sbjct: 326 PVPGHSTSPNLPLTHNIAHNPYPSHSIYPSSNLMPLNN 363


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 108 LVQSLYTTLVRLQKKNMKLIYLCEQHV 188
           L+QS+ T L+  +KKN  + ++  Q V
Sbjct: 267 LIQSIPTHLLDSEKKNFIVDHISNQFV 293


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,333
Number of Sequences: 336
Number of extensions: 2912
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)