Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j05f
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 51 1e-07
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 31 0.16
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.67
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 28 0.88
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po... 27 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.0
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 27 2.7
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 3.5
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 4.7
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 4.7
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 6.2
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa... 25 8.2
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.2
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 50.8 bits (116), Expect = 1e-07
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +2
Query: 251 VILNPVANKRKAKQEFEKYCEPXXXXXXXQVDVVQTASEGNAKEIVETL--RGTEAIIVA 424
V +NP K KAK +E EP +VV T + +AK I + L + I+
Sbjct: 110 VFINPHGGKGKAKHIWESEAEPVFSSAHSICEVVLTRRKDHAKSIAKNLDVGSYDGILSV 169
Query: 425 GGDGTLSETVTGLLRRNDQANMF--PVGVLPLGRTNS 529
GGDG E + GL R+D F PV ++P G N+
Sbjct: 170 GGDGLFHEVINGLGERDDYLEAFKLPVCMIPGGSGNA 206
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 30.7 bits (66), Expect = 0.16
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 119 AIYYASATAKEKYEINILMRAACKEAA-IYGEALLPIERNPTVITVILN--PVANKRKAK 289
AIYY ++ + N+++ C + + + + P+E P + V L+ P A+
Sbjct: 27 AIYY------DRRQKNLIIEKYCSQVRHLADQPMAPLEL-PRKLKVYLHGPPGDGIYVAR 79
Query: 290 QEFEKYCEPXXXXXXXQVDVVQTASEGNAKEIV 388
+EFE+Y P + + V++ EGN E V
Sbjct: 80 EEFEEYIRPIFNAAAIEFETVESKGEGNLLEQV 112
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.7 bits (61), Expect = 0.67
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 453 TVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCTTSTCKPPNNS 319
+ S P P +I +VP +T + +P +V TT T P N +
Sbjct: 183 STSTSCPPPTTILIVTVPTTTTTTTVGYPG-SVTTTLTGTPSNGT 226
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 28.3 bits (60), Expect = 0.88
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Frame = -2
Query: 432 SPPATIIASVPLNVSTISFAFPSEAVCTTSTCKPPNNSNGSQYFSNSC-FAFLLLATGL- 259
S P T++ + P + S +A+ T + PP N NG +Y + C A L A G+
Sbjct: 418 SNPTTLMEAKPDQIDKWS---DGKALIATGSPLPPLNRNGKKYVISQCNNALLYPALGVA 474
Query: 258 ----RITVMTVGFLSMGRRASP*IAASLHAARISIL 163
R +++ G L A + SL AA ++L
Sbjct: 475 CVLSRCKLLSDGMLKAASDALATVPRSLFAADEALL 510
>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 228
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -2
Query: 432 SPPATIIASVPLNVSTISFAFPSEAVCTTSTCKPPNNSNGSQYFSNSC-FAFLLLATGLR 256
S P T++ + P+ + S +A+ T + PP NG +Y + C A L A G+
Sbjct: 81 SNPTTLMEAKPVQIDEWS---NGKALMATGSPLPPLTRNGKEYVISQCNNALLYPALGVA 137
Query: 255 ITVMTVGFLSMG 220
+ LS G
Sbjct: 138 CVLSRCKLLSDG 149
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.0
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = -2
Query: 501 PTGNMFA*SFRLNNPVTVSDKVPSPPATIIASVPLNVS---TISFAFPSEAV-CTTSTCK 334
PTG S L+ P+T + S +T I P + S T S P+ + CTTST
Sbjct: 123 PTGG----SSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSI 178
Query: 333 PPNNSNGS 310
PP + S
Sbjct: 179 PPTGGSSS 186
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 120 LYTTLVRLQKKNMKLIYLCE 179
LYTTL++L KK + LCE
Sbjct: 361 LYTTLIKLSKKERIMDVLCE 380
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 316 WFTIFLKFLFCFPLVGYR 263
W TIFL F+ C L G R
Sbjct: 199 WITIFLVFVICINLFGVR 216
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 86 NNWKKSVLGAVAIYYASATAKEKYEINILMRAACKEAAIYGEALLPIERNPTVITVILN 262
N +K L VA Y K+ E +IL ++ + E LP+ R PT ++ ++
Sbjct: 500 NTLEKEPLSDVATEYWKIKTKDIRESHILNNRRILKSLQFIETELPMIRKPTAMSAFID 558
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 588 VINCLTFCTPLPF-GNKVLPIEFVRPSGNTPTGNMFA*SFRLNNPVTVSDKVPSP 427
+++ L T PF GN+V+P V+ S P M A + + N TV P+P
Sbjct: 328 IMSLLRQTTTTPFAGNQVMPTPQVQGSRPPPPPPMPAPIYNVPNVPTVPTVSPNP 382
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 588 VINCLTFCTPLPFGNKVLPIE 526
VI C TF P+ +G+K L ++
Sbjct: 739 VIYCFTFFAPMTYGDKSLSVD 759
>SPBP19A11.01 |||glycine decarboxylase complex subunit
H|Schizosaccharomyces pombe|chr 2|||Manual
Length = 169
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 196 CNLRRSSPAHRKKPHSHNSYSQPCSQQEES 285
C ++ SSP K + SY+Q C +++ S
Sbjct: 139 CKIKLSSPDELKSLLNDESYAQFCKEEDAS 168
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 378 FAFPSEAVCTTSTCKPPNNSNG 313
FA PSE T + PN+SNG
Sbjct: 51 FAVPSENYADTPSRNTPNSSNG 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,916
Number of Sequences: 5004
Number of extensions: 45364
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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