Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j05f
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   1e-06
SB_20640| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)              29   3.7  
SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09)                28   4.9  
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)                   28   6.5  
SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)        27   8.6  
SB_20979| Best HMM Match : ATP-gua_PtransN (HMM E-Value=5.6e-08)       27   8.6  
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         27   8.6  

>SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
 Frame = +2

Query: 272 NKRKAKQEFEKYCEPXXXXXXXQVDVVQTASEGNAKEIVETLRGT-EAIIVAGGDGTLSE 448
           ++R+A++ F++  EP        V +V+T  EG  K++++ +  + + I+VAGGDGTL E
Sbjct: 7   HQREAEKLFQRNAEPILHLAGLDVTIVKTDYEGQIKKLMQYIDPSLDGIVVAGGDGTLLE 66

Query: 449 TVTGLLRRNDQANMFPVGVLPLGRTNSIGNTLFPNGKGVQ 568
                       +  P+G++P+G  N+  N +F +G   Q
Sbjct: 67  A---------DVSKIPIGIIPVGTNNTFFNRVFGSGNASQ 97


>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
 Frame = +2

Query: 179 AACKEAAIYGEALLPIE-RNPTVITVILNPVANKRKAKQEFEKYCEPXXXXXXXQVDVVQ 355
           A C+E     +A+L      P  + V +NPV  K++A + +    +P       Q +V+ 
Sbjct: 111 ALCREWIKAMQAILNENYERPNRLLVFVNPVGGKKQAAKIYRDKIQPLFELAGIQAEVIV 170

Query: 356 TASEGNAKEIVE--TLRGTEAIIVAGGDGTLSETVTGLLRRNDQ 481
           T    +AK+ +E   L   + +I  GGDG   E + GL+ R  Q
Sbjct: 171 TQRANHAKDYLEEEALEKVDGVICVGGDGMFHEILNGLIIRTQQ 214


>SB_20640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 25/83 (30%), Positives = 35/83 (42%)
 Frame = -2

Query: 579 CLTFCTPLPFGNKVLPIEFVRPSGNTPTGNMFA*SFRLNNPVTVSDKVPSPPATIIASVP 400
           C ++     F NK+  +     S N P       +  L+   TVS   PS   T+  + P
Sbjct: 75  CESYTVSTKFPNKIYKV-----STNIPCETYTVSTSFLDEIYTVSTNFPSETYTVFTNFP 129

Query: 399 LNVSTISFAFPSEAVCTTSTCKP 331
             + T+S  FPSE   T ST  P
Sbjct: 130 SEIYTVSTNFPSETY-TLSTNFP 151


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = -2

Query: 507 NTP-TGNMFA*SFRLNNPVTVSDKVPSPPATIIASVPLNVSTISFAFPSEA-VCTTST 340
           N+P TG+M A S    +PV +  K P PP T   +VP++V   S A PS   V T ST
Sbjct: 437 NSPWTGDMSASSNA--SPVVMRRKAPVPPRTTGETVPISVRQ-SVALPSSTNVATGST 491


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +2

Query: 338 QVDVVQTASEGNAKEIVETLRGTEAIIVAGGDGTLSETVTG 460
           Q+DV     +G A EIV  LR  EA    G D  LS T++G
Sbjct: 578 QLDVQPKKPKGTAPEIVSELRPVEA--TEGDDAVLSCTISG 616


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 459 PVTVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCT-TSTCKPPNNSNGS 310
           PVT  D VP PP T  +SVP    T   + P   V    S   PP   +GS
Sbjct: 569 PVTEHDSVPCPPVTEHSSVPCPPVTEHDSVPCPPVTEHDSVPCPPVTEHGS 619


>SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)
          Length = 558

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 341 VDVVQTASEGNAKEIVETLRGTEA-IIVAGGDGTLSETVTGLLRRNDQANMFPVGVLPLG 517
           +D+ +   E  A E    L G    ++V GGDG++   +  L +   + + + +G+LPLG
Sbjct: 328 IDLHEVPPE-TALEFCRLLPGHRCRVLVCGGDGSVGWVLDALDKVKLKLSPY-IGILPLG 385

Query: 518 RTNSIGNTL 544
             N +   L
Sbjct: 386 TGNDLARVL 394


>SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09)
          Length = 275

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 363 EAVCTTSTCKPPNNSNGSQYFSNSC 289
           E +  T +CK  NN+ GS+  SNSC
Sbjct: 230 EEMLKTHSCKLSNNNGGSRTKSNSC 254


>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
          Length = 336

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -2

Query: 468 LNNPVTVSDKVPS-PPATIIASVPLNVSTISFAFPSEAVCTTSTCKPPNNSNGSQY 304
           L    T +   PS  PAT  +  P+ +   +F F   A  +  T  PP  S  S Y
Sbjct: 236 LPTSATPTGTTPSVSPATYSSPTPVTIQGSTFTFDDNAFLSLLTPPPPQASMSSPY 291


>SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)
          Length = 490

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 62  AKFAKTIRNNWKKSVLGAVA 121
           A FA TIRN+W +S+LG  A
Sbjct: 28  AGFAATIRNDWIRSLLGLEA 47


>SB_20979| Best HMM Match : ATP-gua_PtransN (HMM E-Value=5.6e-08)
          Length = 322

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 62  AKFAKTIRNNWKKSVLGAVA 121
           A FA TIRN+W +S+LG  A
Sbjct: 19  AGFAATIRNDWIRSLLGLEA 38


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 341 VDVVQTASEGNAKEIVETLRGTEAIIVAGGDGTLSETVTG 460
           V +V T ++   K +V     T  I+V G D T+   VTG
Sbjct: 873 VKLVVTGNDSTVKLVVTGNDSTVKIVVTGNDSTVKLVVTG 912



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 341  VDVVQTASEGNAKEIVETLRGTEAIIVAGGDGTLSETVTG 460
            V +V T ++   K +V     T  ++V G D T+   VTG
Sbjct: 895  VKIVVTGNDSTVKLVVTGNDSTVKLVVTGNDSTVKLVVTG 934


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,804,148
Number of Sequences: 59808
Number of extensions: 335153
Number of successful extensions: 1107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)