Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j05f
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.55 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.0  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 428 GDGTLSETVTGLLRRNDQANMFPVGVLPLGRTNSIGNTL 544
           G  TL++ +TG +   +    F   ++P  R+ SI NTL
Sbjct: 652 GVETLAQFLTGNMAVTEVTVRFSDTIVPRSRSGSISNTL 690


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 444 DKVPSPPATIIASVPLNVSTISFAF 370
           DK+  PP  I +  P+NV T ++ +
Sbjct: 24  DKMTRPPGEINSINPINVYTKAYIY 48


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 151 FFCSRTSVVYSDCTKD*FLPIVSYCFG 71
           FF S  SVV  D T++  L    Y FG
Sbjct: 8   FFLSLVSVVLLDTTQEEKLEWTKYPFG 34


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 289 FCFPLVGYRVENNCYDCGVSFDGQESFAVNCSL 191
           F +P V Y V+N    C V+     S   NC L
Sbjct: 140 FDYPQVPYTVKNFHPRCAVNNYNDPSNVRNCEL 172


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -1

Query: 190 FTCCSHKYINFIFFFCSRTSVVY 122
           + CC   YI+  F    R   +Y
Sbjct: 211 YNCCPEPYIDITFVVIIRRRTLY 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,471
Number of Sequences: 438
Number of extensions: 3411
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)