Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j04r
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 191 4e-49
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 191 bits (466), Expect = 4e-49
Identities = 91/149 (61%), Positives = 110/149 (73%)
Frame = -1
Query: 606 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 427
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I + +L +GFVFLFT+GGLTGV
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60
Query: 426 ILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFT 247
ILANSS+D+ +HDTYYVVAHFHYVLS + TG N KI F+
Sbjct: 61 ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWI 120
Query: 246 IFIGVNITFFPQHFLGLAGIPRRYSDYPD 160
+FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 121 MFIGVNITFFPQHFLGLAGFPRRYSDFAD 149
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/45 (68%), Positives = 34/45 (75%)
Frame = -1
Query: 294 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 160
TG N KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 210 HFLGLAGIPRRYSDYPD 160
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 210 HFLGLAGIPRRYSDYPD 160
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 210 HFLGLAGIPRRYSDYPD 160
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 210 HFLGLAGIPRRYSDYPD 160
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 210 HFLGLAGIPRRYSDYPD 160
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 210 HFLGLAGIPRRYSDYPD 160
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 627 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 478
HH+ T+ I + T+I PT I + + +H T IN +P ++
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 307 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 185
+ FIY + FL +KN F+ YW+ YN F W T
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56
>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 231 NITFFPQHFLGLAGIPRRY 175
+I F +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,456,346
Number of Sequences: 59808
Number of extensions: 174042
Number of successful extensions: 274
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -