Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j03f
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760...    32   0.37 
06_03_1301 - 29159262-29159810,29160360-29160493,29160615-291607...    29   3.4  
02_02_0549 + 11410129-11412180                                         29   3.4  
06_03_1234 - 28586365-28587973,28590411-28590694                       29   4.5  
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     28   7.9  
10_02_0061 - 4812903-4812940,4813140-4813536                           28   7.9  
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407...    28   7.9  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   7.9  

>08_01_0786 -
           7606984-7607037,7607235-7607379,7608103-7608163,
           7608273-7608465
          Length = 150

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -3

Query: 306 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEPPTILV 181
           E    +  AP    LPF S + + AR G APAL+A P   LV
Sbjct: 2   EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43


>06_03_1301 -
           29159262-29159810,29160360-29160493,29160615-29160750,
           29161031-29161347,29161872-29161944
          Length = 402

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
 Frame = -2

Query: 172 VSGFLGASKTLSP----GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHGY----YQFTG 17
           + G + A K L+P    GD + +  V + G + H +  +   YCCED H      Y   G
Sbjct: 108 IHGAVVAVKQLNPLGHQGDREWLTEVSYLGQYNHPNLVELIGYCCEDDHRLLVYEYMANG 167

Query: 16  SLE 8
           SLE
Sbjct: 168 SLE 170


>02_02_0549 + 11410129-11412180
          Length = 683

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 362 LAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 505
           LA     +F+G   V ++S HL         N D   IN+NHVG N N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLFAVELDTIQNPDFRDINNNHVGININ 176


>06_03_1234 - 28586365-28587973,28590411-28590694
          Length = 630

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
 Frame = +2

Query: 197 GSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC---------WRTRNAQA 349
           G+ A AG  P L  + ++L  GR  I G S+     S +  +          WR  N   
Sbjct: 527 GNPAGAGPPPRLDHVAVSLPGGRVLIFGGSV-AGLHSASQLYLLDPTEEKPTWRILNVPG 585

Query: 350 RQFTLAFGTANIFSGGTR 403
           R    A+G +    GGT+
Sbjct: 586 RPPRFAWGHSTCVVGGTK 603


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 275 CGASLLTNTRSVTAAHC 325
           CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291


>10_02_0061 - 4812903-4812940,4813140-4813536
          Length = 144

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 63  WRWRPWSW---QKRPSNLTTTTRSVSPGLRVLDAPRKP 167
           WRWR W W    +R ++ T    S++ G R+L   R P
Sbjct: 41  WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77


>07_03_1704 +
           28839628-28839908,28840010-28840123,28840416-28840769,
           28841072-28841268,28841496-28841587,28841700-28842027,
           28842328-28842535,28843555-28843669,28844023-28844190,
           28844804-28845476,28845552-28845758,28845911-28847001
          Length = 1275

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 418 TGGGDPGAAGEDVSCTKSEGELTSL 344
           +GGG+PG  G++ S TK+ G +  L
Sbjct: 438 SGGGNPGMMGQNDSSTKTVGNMLHL 462


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 227 GGEHQRWRQNHPQSW 183
           GG HQR R +HP +W
Sbjct: 559 GGHHQRRRHHHPPAW 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,280,600
Number of Sequences: 37544
Number of extensions: 308323
Number of successful extensions: 1203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)