Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j03f
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    49   3e-06
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    42   5e-04
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    38   0.009
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    37   0.012
AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical ...    31   0.58 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    29   3.1  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast...    27   9.4  
U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    27   9.4  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 30/97 (30%), Positives = 50/97 (51%)
 Frame = +2

Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRNAQARQFTL 364
           RI+GG++ + GA+  +A LV    NG+  +CGA+++ +   VTAAHC      Q R F  
Sbjct: 37  RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93

Query: 365 AFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAII 475
                N  +     +    ++H  YN    +ND+A++
Sbjct: 94  VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALL 128


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
 Frame = +2

Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRNAQARQFT 361
           R+VGG     GA P  A L    T      CGAS+L  T  +TAAHC+       + +  
Sbjct: 26  RVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVV 83

Query: 362 LAFGTANIFSGGTRV-TTSSVHLHGSYNMNNLNNDVAIINHNHVG--FNNNIQRINLAS 529
           +     N   G  ++     +H +  Y  +  ++D+AI+   + G  FN   Q I L S
Sbjct: 84  VGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPS 141


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 182 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 325
           T I+ G +AN+     LA ++    +G T++CG  L+  +  +T+AHC
Sbjct: 15  TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +2

Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRNAQARQFTL 364
           R++GGS ++  + P    L+  L + R   CG SL+     +TAAHC+  ++ +   +++
Sbjct: 57  RLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCF-AKDRRPTSYSV 112

Query: 365 AFGTANIFSGGT-RVTTSSVH 424
             G     SG   RVT  S+H
Sbjct: 113 RVGGHRSGSGSPHRVTAVSIH 133


>AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical
           protein Y44A6D.3 protein.
          Length = 229

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 389 SGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQ 511
           +   R+   S H  G   +NN+NN+    NHNH   NNNIQ
Sbjct: 68  AAAARLNAQSSHSSGPARLNNMNNN-NNNNHNH-SKNNNIQ 106


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +2

Query: 200 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 331
           +A N G   HLA   + +    R      ICG +L+T    +TAAHC++
Sbjct: 32  AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 245 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 126
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 245 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 126
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 412 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 326
           GG PG AG+  S     G+    G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 412 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 326
           GG PG AG+  S     G+    G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220


>U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform b protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 496 QQQHPAHQPSQWKQQLCWYLGLGCRLREDL---RCCFGSQQP 612
           QQQH A Q +Q  QQ   Y G+   +  D+   R  FG   P
Sbjct: 468 QQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPP 509


>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 496 QQQHPAHQPSQWKQQLCWYLGLGCRLREDL---RCCFGSQQP 612
           QQQH A Q +Q  QQ   Y G+   +  D+   R  FG   P
Sbjct: 649 QQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPP 690


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,610,845
Number of Sequences: 27780
Number of extensions: 231316
Number of successful extensions: 786
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)