Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j02r
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    26   2.7  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   3.5  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    25   6.1  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   8.1  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   8.1  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 238 GAVYLTLTACELAVAARVTTKLRNS 312
           G + +  TACE  +AARV  KL+ S
Sbjct: 328 GVMDVRTTACEALLAARVEQKLKGS 352


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = +3

Query: 162 PDKADGRELGHPYFPGSDGPDASTGRRRVPHVDSLRAGCRSTSHNEAP*QSIIWSNTADC 341
           P+K DG +      P  + PD +     VP   S  A  + +S +E P +S   ++T+  
Sbjct: 27  PNKRDGGKDNESVIPEKEEPDLNEPVLAVPLPKSRYALTKRSSSSEYPRRS---ASTSAK 83

Query: 342 QTVCSASRAGVSHFISRHGD 401
           + V   +R+  + F S+  D
Sbjct: 84  KNVIPITRSYSTTFFSKTND 103


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 186 LGHPYFPGSDGPD 224
           LGHP FPG  G D
Sbjct: 228 LGHPLFPGESGID 240


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 252 HVDSLRAGCRSTSHNEAP*QSIIWS 326
           +V+S   G  STS+N+ P QS+  S
Sbjct: 336 NVNSYNGGIPSTSYNDTPQQSVTGS 360


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -3

Query: 288 SCCDSQLAGC-QREVHGACR*TRQGRPSPGSRGVPVRDRPPCRGRGR 151
           SCC S+   C  +E  G C   +    S   +     ++P C   G+
Sbjct: 246 SCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTSEKPSCCSNGK 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,048
Number of Sequences: 5004
Number of extensions: 29337
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)