Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j02r
(488 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034) 30 0.89
SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21) 29 1.6
SB_31270| Best HMM Match : rve (HMM E-Value=0.0043) 29 2.1
SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_41500| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 27 8.3
SB_21523| Best HMM Match : Pkinase (HMM E-Value=9.5e-14) 27 8.3
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 27 8.3
SB_33462| Best HMM Match : DUF400 (HMM E-Value=6.7) 27 8.3
>SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)
Length = 720
Score = 30.3 bits (65), Expect = 0.89
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +3
Query: 228 STGRRRVPHVDSLRAGCRSTSHNEAP*QSIIWSNTAD--CQTVCSASRAGVS---HFISR 392
ST RR+ V LR+ CR + A ++ TAD ++ SASR+ +S H +SR
Sbjct: 575 STERRKRRFVSPLRSSCRGRRRDSAH-KATACGRTADQGARSGDSASRSRISAVIHEVSR 633
Query: 393 HGDDR 407
H D R
Sbjct: 634 HLDTR 638
>SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21)
Length = 319
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 243 GACR*TRQGRPSPGSRGVPVRDRPPC 166
GAC QGR PG RGV +RD C
Sbjct: 104 GACISGIQGRVHPGYRGVHIRDTGAC 129
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 243 GACR*TRQGRPSPGSRGVPVRDRPPCRGR 157
GAC Q R PG RGV +RD C R
Sbjct: 127 GACTSGIQERAHPGYRGVHIRDTGACTYR 155
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 243 GACR*TRQGRPSPGSRGVPVRDRPPC 166
GAC QGR G RGV +RD C
Sbjct: 81 GACTSGIQGRAHTGYRGVHIRDTGAC 106
>SB_31270| Best HMM Match : rve (HMM E-Value=0.0043)
Length = 479
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 202 SRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSFGAILPIA 342
S R LTRL ++ L +T CE + R N ++ G +LPIA
Sbjct: 260 SNIRGVLTRLQVHSLCLQITKCEFVL--REVEYKGNKITQGGVLPIA 304
>SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 184 NWDTPTSRARTALTRLPAGAVYLTLTACELAVAARVTT 297
+WD S A L P G+ + L AC+L R TT
Sbjct: 35 SWDALVSLAEDDLKGCPRGSSRVDLQACKLGTGRRFTT 72
>SB_41500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -2
Query: 118 QHEEDITSMYRFGDAKPHLSSRQTHMHLFVNSVVLQYY 5
+ EED T Y + KP L+ + +H V+ ++++Y+
Sbjct: 118 ESEEDETEPYEIKEIKPELTVEEFELH--VDPIIVEYF 153
>SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 303 ELRCDSCCDSQLAGCQREVHGA 238
E+ CDSC DSQ + EV+G+
Sbjct: 122 EMICDSCMDSQQVITKEEVNGS 143
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 156 PAPDKADGRELGHPYFPGS 212
P PD AD +E PYFP S
Sbjct: 353 PLPDSADPKENTKPYFPQS 371
>SB_21523| Best HMM Match : Pkinase (HMM E-Value=9.5e-14)
Length = 322
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 141 RHSPVQKLSTKRISLQCTDL 82
RH+PV K++ R+S C DL
Sbjct: 191 RHNPVLKIAGPRVSADCRDL 210
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 288 SCCDSQLAGCQREVHGACR*TRQGRPSPGSRGV 190
SC +L GC R+ G+ R +PS SR V
Sbjct: 435 SCATGRLPGCTRKPSGSSRRVFSRKPSGSSRRV 467
>SB_33462| Best HMM Match : DUF400 (HMM E-Value=6.7)
Length = 212
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 143 KLNRPRPRQGGRSXXXXXXXXXXXXXXXVYRQAPC 247
KL R RPR+ G+S VYR+ PC
Sbjct: 31 KLRRRRPRRPGQSATEKEKPAPVLGPSDVYRENPC 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,503,001
Number of Sequences: 59808
Number of extensions: 256271
Number of successful extensions: 666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -