Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j02r
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein ...    28   2.9  
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...    28   3.9  
At4g14280.1 68417.m02201 hypothetical protein                          27   6.8  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    27   9.0  

>At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein
           contains Pfam profile PF04410: Gar1 protein RNA binding
           region
          Length = 189

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 222 QGRPSPGSRG---VPVRDRPPCRGRGRFNFRHSP 130
           Q +   G RG   VP R R P RGRG F  R +P
Sbjct: 133 QPKGQSGGRGEGRVPPRGRGPPRGRGNFRGRGAP 166


>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +3

Query: 156 PAPDKADGRELGHPYFPGSD---GPDASTGRRRVPHVDSLRAGCRS 284
           PA  K   + LG P+  G D   GP    G RR    D  R G +S
Sbjct: 89  PATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGPKS 134


>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 193 TPTSRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSF 321
           TP  R  T L  +PA    LTL A  LAV  ++ + L  SL F
Sbjct: 27  TPEPRRPTQLPPVPAPEKKLTLFALRLAVLEKIASGL-GSLGF 68


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 192 VPVRDRPPCRGRGRFNFRHSPV 127
           V V D P   GRGR+N R SPV
Sbjct: 262 VDVYDLPGPAGRGRYNRRMSPV 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,181,324
Number of Sequences: 28952
Number of extensions: 166263
Number of successful extensions: 341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)