Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j02f
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   3.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   3.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   3.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 508 LNTNPLINYSIVKPLSHKQMHMCL 437
           L  NP  NYS    LSH +  M L
Sbjct: 181 LVANPTANYSASTTLSHAEYSMLL 204


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 142 GLAIGSIAPNDRLL 183
           GLA+G I  NDR+L
Sbjct: 250 GLALGPIRNNDRIL 263


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 168 WSNTADCQTVCSASRAGVSHF 106
           W+N  DC  + SA +  +  F
Sbjct: 116 WANYKDCSGIVSAYKIAIDKF 136


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 310 TVRLVGGGVGSTFVTLQFRNSARRGYHFNVQI 405
           +VRL+  G    FVT+Q +      ++ N+ I
Sbjct: 301 SVRLISSGFFDNFVTVQIQPLKNELFNANIGI 332


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 168 WSNTADCQTVCSASRAGVSHF 106
           W+N  DC  + SA +  +  F
Sbjct: 116 WANYKDCSGIVSAYKIAIDKF 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,125
Number of Sequences: 438
Number of extensions: 2276
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)