Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i24r
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)                   29   1.2  
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)                   28   2.7  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           27   4.8  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         27   8.3  
SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)                     27   8.3  
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
          Length = 249

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -1

Query: 221 IAGFATHLMRRLRHSQVRGISIKLQE--EERERRDNYVPEVSALEHDIIEVDPDTKDML 51
           I   + ++MR+ R +  R ++ +LQE   E++R+D    E++ L    I +D   KD L
Sbjct: 44  IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102


>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
          Length = 996

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 27  NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 131
           N+   ++ +H++  G    D M E++HF  W++V  P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = -1

Query: 263 EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDI 84
           + +  +P++ LRN++   +  L R +   Q   I  K +EE+ +   NY+   +  EH +
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL-RTARKEHKL 514

Query: 83  I 81
           +
Sbjct: 515 M 515


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 311 YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 222
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -1

Query: 200 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 57
           L +R RHS+    S     + RE+  +++ ++  LE++    D DT++
Sbjct: 54  LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 113 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 18
           PE+S + H I    PD +D   +L+F+NI G+
Sbjct: 112 PEISKMLHHIY---PDLEDHESVLNFDNIKGV 140


>SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)
          Length = 275

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 175 KCEESLSNFRKRSVRGVTTMSQKCLL 98
           KC  SL  F+K  ++G T +S+K L+
Sbjct: 112 KCILSLGRFKKAKIKGQTFVSKKALV 137


>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 289 ILIQIKEYVKKSLSFLPSLLGIKLLDL 209
           +L  I+E  K  L+ LPSL+ +K LDL
Sbjct: 219 LLAWIQEKRKNGLAILPSLIRMKALDL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,549,710
Number of Sequences: 59808
Number of extensions: 201187
Number of successful extensions: 500
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)