Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i21r
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667...    70   2e-12
05_01_0139 + 929343-930188                                             32   0.51 
05_01_0382 + 2985526-2986659                                           30   1.6  
02_05_0184 + 26543156-26544019                                         29   4.8  

>07_03_0823 +
           21765960-21766064,21766166-21766327,21766616-21766741,
           21766831-21766956,21767519-21767698,21768204-21768452
          Length = 315

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 29/71 (40%), Positives = 49/71 (69%)
 Frame = -2

Query: 704 LRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRY 525
           LR L+ +++ S D   LAVACYD+ ++++++P G+ ++  L  K RVM L++H++  VR 
Sbjct: 235 LRVLMTIIDTSADTTALAVACYDLSQFLQYHPSGRIVVADLKAKDRVMKLMNHENAEVRK 294

Query: 524 EALLAVQKLMV 492
            ALL VQ+L +
Sbjct: 295 NALLCVQRLFL 305


>05_01_0139 + 929343-930188
          Length = 281

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 659 VLAVACYDIGEYVRHYPRGKHI--IEQLGGKQRVMYLL 552
           ++ VA Y  G+  RH PRGKHI  +  L G    M LL
Sbjct: 95  MVTVAGYTAGQRARHVPRGKHIAAVSILAGTSVTMALL 132


>05_01_0382 + 2985526-2986659
          Length = 377

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 599 VCRAD-SGAHILRCHSKRRRVRQGRGSSPASAPGCG 703
           VCRA  +G    RCH+  R V   R + P +A GCG
Sbjct: 162 VCRAAVAGGEYRRCHALERLVDAIRVACPHAAHGCG 197


>02_05_0184 + 26543156-26544019
          Length = 287

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 641 SKRRRVRQGRGSSPASAPGCG 703
           SK +++++ R +SPA  PGCG
Sbjct: 32  SKHKQLKRKRSTSPAPPPGCG 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,167
Number of Sequences: 37544
Number of extensions: 331368
Number of successful extensions: 827
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)