Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i21r
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)             122   3e-28
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  

>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score =  122 bits (294), Expect = 3e-28
 Identities = 55/81 (67%), Positives = 67/81 (82%)
 Frame = -2

Query: 701 RTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYE 522
           R L  LLE S DP++LAVA +D GEYVRHYPRGK ++E LG K +VM +++H+DP+VR E
Sbjct: 376 RVLNKLLESSEDPLILAVAAHDTGEYVRHYPRGKTVLESLGCKGKVMQMMTHNDPSVRKE 435

Query: 521 ALLAVQKLMVHNWEYLGKQLE 459
           ALLAVQKLMVHNWEYLGK L+
Sbjct: 436 ALLAVQKLMVHNWEYLGKALK 456


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 203  IQKYDRILHV*KLCFNYDLINIIYYVNHKTV 111
            +  YDR+LH+ + C+N  LI++ + +  K V
Sbjct: 2101 LSNYDRVLHILQYCYNGKLIDVGFLLGRKYV 2131


>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 560  YLLSHDDPNVRYEALLAVQKLMVHNWEYLGKQLEKEQID 444
            YLL+   P+V     L   KL++ N E+ G Q++ E +D
Sbjct: 1227 YLLNVTIPHVGKTTRLGFVKLVIKNMEHQGPQIDVEAVD 1265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,692,776
Number of Sequences: 59808
Number of extensions: 401838
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)