Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i21r
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family ...    67   1e-11
At2g15780.1 68415.m01809 glycine-rich protein similar to Blue co...    31   0.56 
At2g37330.1 68415.m04578 expressed protein  and genefinder             31   0.74 
At1g06630.1 68414.m00700 F-box family protein contains F-box dom...    29   3.0  
At2g17900.1 68415.m02073 zinc finger (MYND type) family protein ...    29   4.0  
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O...    29   4.0  
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O...    29   4.0  
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa...    27   9.2  
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa...    27   9.2  

>At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family
           protein identical to probable vacuolar ATP synthase
           subunit H (EC 3.6.3.14)(V-ATPase H subunit) (Vacuolar
           proton pump H subunit) (Vacuolar proton pump subunit
           SFD) SP:Q9LX65 from [Arabidopsis thaliana]; contains
           Pfam PF03224: V-ATPase subunit H
          Length = 441

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 28/71 (39%), Positives = 50/71 (70%)
 Frame = -2

Query: 704 LRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRY 525
           LR L+ +L+ S DP  LAVAC+DI ++++++  G+ I+  L  K+RVM L++H++  V  
Sbjct: 361 LRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIVADLKAKERVMKLINHENAEVTK 420

Query: 524 EALLAVQKLMV 492
            A+L +Q+L++
Sbjct: 421 NAILCIQRLLL 431


>At2g15780.1 68415.m01809 glycine-rich protein similar to Blue
           copper protein precursor (SP:Q41001) {Pisum sativum};
           contains a Pfam PF02298: Plastocyanin-like domain
           related to blue copper-binding protein; contains a
           domain related to blue copper-binding protein
          Length = 257

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 483 GISRQATGEGTNRQTGWHCGWS*GINF 403
           G S  ++G G+N ++GW  GW  G N+
Sbjct: 36  GHSNNSSGSGSNSRSGWGWGWGQGSNY 62


>At2g37330.1 68415.m04578 expressed protein  and genefinder
          Length = 273

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 659 VLAVACYDIGEYVRHYPRGKHI--IEQLGGKQRVMYLL 552
           +++VA Y  G+  RH PRGK++  +  L G    M+LL
Sbjct: 87  MVSVAGYTAGQRARHVPRGKYVAGLSILAGTSITMFLL 124


>At1g06630.1 68414.m00700 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 379 LIYNVMS*KIYALAPTTVPACLSICSFSSCLPRYSQL*TISFCT 510
           LI  + + +I +L+P +V    S C +   LP ++ L ++SF T
Sbjct: 284 LIMGIRNVEILSLSPDSVGVIYSCCKYGLLLPVFNNLVSLSFGT 327


>At2g17900.1 68415.m02073 zinc finger (MYND type) family protein /
           SET domain-containing protein contains Pfam profiles
           PF00856: SET domain,  PF01753: MYND zinc finger (ZnF)
           domain; confirmed by cDNA (Paola Vittorioso--accession
           not assigned yet (paola.vittorioso@uniroma1.it)
          Length = 480

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 523 KPCSPCRNLWFTTGNISASNWRRNKSTNRLALWLELRHKFFMT 395
           K CS C+ +W+   +   S W+ ++   +    LE   + F+T
Sbjct: 66  KKCSACQVVWYCGSSCQKSEWKLHRDECKALTRLEKEKRKFVT 108


>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
           SP|O14617 Adapter-related protein complex 3 delta 1
           subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 869

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 602 KHIIEQLGGKQRVMYLLSHDDPNVRYEAL 516
           KH+   L  K+ V+  +S +DPNV+ EAL
Sbjct: 326 KHLWAVLENKEVVVKAMSDEDPNVKLEAL 354


>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
           SP|O14617 Adapter-related protein complex 3 delta 1
           subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 869

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 602 KHIIEQLGGKQRVMYLLSHDDPNVRYEAL 516
           KH+   L  K+ V+  +S +DPNV+ EAL
Sbjct: 326 KHLWAVLENKEVVVKAMSDEDPNVKLEAL 354


>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 510 RAETYGSQLGISRQATGEGTNRQTGWHCGW 421
           R  +YGS LG S QA GE ++       GW
Sbjct: 170 RHNSYGSSLGSSVQAAGESSSGPASPFGGW 199


>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 510 RAETYGSQLGISRQATGEGTNRQTGWHCGW 421
           R  +YGS LG S QA GE ++       GW
Sbjct: 170 RHNSYGSSLGSSVQAAGESSSGPASPFGGW 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,215,344
Number of Sequences: 28952
Number of extensions: 269632
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)