Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i21f
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 28 1.4
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 28 1.4
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 27 3.2
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 27 3.2
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 26 4.2
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 26 4.2
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 26 5.6
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 7.4
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 9.7
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 25 9.7
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 188 FGVSHLPGSVGRWWPQSCRFFR-HLALELTD*HFPR 84
FG+ LP +VG+WW S + R H+ ++ D FP+
Sbjct: 203 FGIV-LPYAVGKWWYGSRTYTRDHVHVDTVDEWFPK 237
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +2
Query: 173 SEIRQTRINWQSYLQSQMITQRDHDFIVNLDQR---GQKDLPDKNPDACAEVFLNLLTHI 343
+ +R I WQ Y +S + + + I NL + +++ A + +FL LL+
Sbjct: 29 NNVRCVAIPWQGYQRSGSLEENELQEIENLTGKPLSAYVKTAEEDTTAYSNLFLKLLSMK 88
Query: 344 SKDHTIQYILV-LIDDILSEDK 406
+ + LV L D +L+ +K
Sbjct: 89 DTPDVVNFALVKLADTLLNSNK 110
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 201 QLIRVWRISLARICRTLVAAIMSIFSSPSVGI 106
Q I WR+ C ++ I+S+FSS GI
Sbjct: 492 QTILFWRLQPLEACIFFISVIVSVFSSIENGI 523
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +2
Query: 428 ETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKT 607
E++ S + + +LL+ QD+ + ++ ++AKL HP L+ K + +L L +
Sbjct: 58 ESRGSMELLENCFSLLHAQDDTSKFVSLTMLAKLLNDHPNLIFKCWERMDMKFLDRLLLS 117
Query: 608 NNNDYI 625
+ +Y+
Sbjct: 118 THYEYV 123
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 427 TKYLHPRFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIRIL 293
+KY P+F+F K ++E + + +G+ + M V + G I +L
Sbjct: 46 SKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDML 90
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 392 LSEDKSRVKIFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMD 556
L DK+++K+F E K ++ P N++ D F +I +L C H LM+
Sbjct: 76 LQNDKTKLKLFGEIKVHQSMSHP--NIVGFIDCFEDSTNIYLILEL-CEHKSLME 127
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 362 EWCGPC*YASGG*ERLRHRHQ 300
+WCGPC Y E+L ++Q
Sbjct: 45 DWCGPCKYLKPFLEKLSEQNQ 65
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 103 VNSNAR*RKNRHDCGHQRPTDPG-K*DTPNSD*LAVI 210
VN NA RKN D Q P P K PN+D V+
Sbjct: 62 VNENAEERKNSRDLRKQLPDRPKFKKRIPNNDSWVVV 98
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 358 GVVLADMRQEVEKDFGTGIRILVRQIFLA 272
GVVL+D E +F T R + RQ+ +A
Sbjct: 647 GVVLSDFEWTAENNFLTASRKVKRQVIVA 675
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 9.7
Identities = 7/29 (24%), Positives = 20/29 (68%)
Frame = -3
Query: 655 HHLQTPGHRLDIVVVIGLELIFKPGEIEV 569
HH + G+ L ++ ++GLE+ ++ ++++
Sbjct: 402 HHHRVSGYSLKMIRLVGLEMAYRFRQLDI 430
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,411
Number of Sequences: 5004
Number of extensions: 50090
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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