Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i21f
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   7e-24
SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)                    30   1.5  
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)                   29   3.4  

>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 68.5 bits (160), Expect(2) = 7e-24
 Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
 Frame = +2

Query: 140 IAATSVLQIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLD----QRGQKDLPDKNPDA 307
           + A S L   A E+R+  +NWQSY+  +MI+Q D+  I + D        K + D+  D 
Sbjct: 31  VIAGSRLVADAVEVRKQTVNWQSYVHGKMISQEDYSMIADYDCMDPVERAKIISDRG-DQ 89

Query: 308 CAEVFLNLLTHISKDHTIQYILVLIDDILS 397
            A+  L+LL  +++DHTI+YILVLIDD+L+
Sbjct: 90  LAKTCLSLLVKLTRDHTIRYILVLIDDMLN 119



 Score = 60.1 bits (139), Expect(2) = 7e-24
 Identities = 26/49 (53%), Positives = 37/49 (75%)
 Frame = +2

Query: 515 IIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLR 661
           I+AKLACW    + +SDL+F+LSWLK+QL +   +Y+ S+A  LQ+MLR
Sbjct: 123 IVAKLACWGNVRLPESDLNFFLSWLKNQLTSPTCEYLHSIALSLQLMLR 171


>SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)
          Length = 289

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
 Frame = +2

Query: 263 DQRGQKDLPDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFS 442
           D R Q     +         + L   I+K H I Y L   D I   + +  ++  +    
Sbjct: 101 DIRNQSQYSHRQGQLITTRMMRLFDLIAKKHNISYWLTSADYIKFFEVAAKELPSDMFLQ 160

Query: 443 GNVWQPFLNLLNRQ-DEFVQHMTARIIAKLACWHPQLMDKSDLHFY 577
            ++  P+L   N+Q    + H    I  +   W+P+L DK   + Y
Sbjct: 161 NSISDPYLRPDNKQYAASITHPKVGIYQR--SWNPRLRDKKSCYKY 204


>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
          Length = 1962

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
 Frame = +2

Query: 347 KDHTIQYILVLIDDILSEDKSRVKIFRE--TKFSGNVWQPFLNL-----LNRQDEFVQHM 505
           KD T + I+   + I    +   K+  +  T+F   ++Q FL        + + E    +
Sbjct: 674 KDKTGKRIVEAFESIFEGGRQPEKLQTDDGTEFKNRIFQAFLKSQGIQHFSTRSELKASV 733

Query: 506 TARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDYIQSVAR 640
             R    L  W  +     + H Y+  L   +  NN+ Y +S+ R
Sbjct: 734 VERFNRTLKTWMWRWFTYKETHRYVDMLPQLVHNNNHSYHRSIRR 778


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,108,444
Number of Sequences: 59808
Number of extensions: 387498
Number of successful extensions: 916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)