Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i21f
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 159 2e-39
U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical p... 100 8e-22
U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical pr... 31 0.96
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 30 1.3
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 30 1.3
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 30 1.3
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 30 1.3
Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical p... 29 2.2
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 28 6.8
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 28 6.8
>U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase
protein 15 protein.
Length = 470
Score = 159 bits (386), Expect = 2e-39
Identities = 80/186 (43%), Positives = 118/186 (63%), Gaps = 9/186 (4%)
Frame = +2
Query: 131 IDMIAATSVLQIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQKDLPDK----- 295
+DM+ ATS LQ+ A E+R + NW SY +SQMI + D++FI + + K+ D+
Sbjct: 12 VDMLNATSRLQLEAQELRNNKPNWGSYFRSQMIQEDDYNFITSFENAKSKEERDQVLAAN 71
Query: 296 NPDA-CAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRET--KFSGNVWQPFL 466
N + A+ NL+T ++KD ++Y+L L DD+L EDKSRV++F + VW +L
Sbjct: 72 NANGQAAKTMANLITQVAKDQNVRYVLTLFDDMLQEDKSRVELFHSAAARQKRTVWSQYL 131
Query: 467 NLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLK-TNNNDYIQSVARC 643
+L RQD F+ + + IIAKLAC+ M+ DL +Y S+LK+QLK + NDY+ + ARC
Sbjct: 132 GILQRQDNFIVNQMSSIIAKLACFGTTRMEGQDLQYYFSFLKEQLKNSTTNDYMNTTARC 191
Query: 644 LQMMLR 661
LQMMLR
Sbjct: 192 LQMMLR 197
>U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical
protein F52E1.10 protein.
Length = 451
Score = 100 bits (240), Expect = 8e-22
Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 7/174 (4%)
Frame = +2
Query: 161 QIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQK----DLPDKNPDACAEVFLN 328
Q A ++R + NW + +++MI Q D+DFIV Q + + + F++
Sbjct: 15 QKEADKVRAMKTNWGLFTRTRMIAQSDYDFIVTYQQAENEAERSTVLSVFKEKAVYAFVH 74
Query: 329 LLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETK--FSGNVWQPFLNLLNRQDEFVQH 502
L++ ISKD ++Y L LIDD+L ED +R IF + + + F+ LL+RQD+++ H
Sbjct: 75 LMSQISKDDYVRYTLTLIDDMLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQYIVH 134
Query: 503 MTARIIAKLACWHPQLMDKSDLHFYLSWLKDQL-KTNNNDYIQSVARCLQMMLR 661
+T I+ K+A + + +L + + LK+ + + NNDYI + RC+Q + R
Sbjct: 135 ITFSILTKMAVFGNIKLSGDELDYCMGSLKEAMNRGTNNDYIVTAVRCMQTLFR 188
>U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical
protein K04A8.5 protein.
Length = 411
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 448 VAREFRLTKYLHPRFIFRKNVINEHKNVLNGVVLAD 341
V FR+ Y H FI+ N ++ NV+ G++L D
Sbjct: 373 VQGSFRIENYNHLHFIWGTNAASQVYNVITGIILQD 408
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -2
Query: 515 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 345
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 344 *YASGG*ERLRHRHQDSCQADLFG 273
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -2
Query: 515 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 345
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 344 *YASGG*ERLRHRHQDSCQADLFG 273
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -2
Query: 515 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 345
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 344 *YASGG*ERLRHRHQDSCQADLFG 273
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -2
Query: 515 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 345
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 344 *YASGG*ERLRHRHQDSCQADLFG 273
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical
protein C08H9.5 protein.
Length = 502
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 452 WQPFLNLLNRQDEFVQ--HMTARI--IAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNND 619
W+ L+ LN Q H A I + KL CW + ++ + + + +LKT +N+
Sbjct: 413 WKYVLSYLNEGKRLAQPAHADAEIYNVMKL-CWDLDMNSRTTFLDCIEFFEKELKTTSNE 471
Query: 620 YIQSVARCLQ 649
Y + R L+
Sbjct: 472 YFLDLTRKLR 481
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 488 EFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLK-DQLKTNNNDYIQSVARCLQMMLR 661
+ V HM A + A L+ + L F ++ D N D++Q + RCL ++LR
Sbjct: 227 DHVNHMVAALCAVADDTGSPLVQRYLLDFLVAAFPLDSTNLTNEDFVQLLRRCLFVVLR 285
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 488 EFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLK-DQLKTNNNDYIQSVARCLQMMLR 661
+ V HM A + A L+ + L F ++ D N D++Q + RCL ++LR
Sbjct: 227 DHVNHMVAALCAVADDTGSPLVQRYLLDFLVAAFPLDSTNLTNEDFVQLLRRCLFVVLR 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,840,390
Number of Sequences: 27780
Number of extensions: 293642
Number of successful extensions: 862
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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