Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i19f
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 28 1.3
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 27 1.7
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 2.2
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 27 2.9
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 27 2.9
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 26 5.1
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 25 6.7
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 6.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.8
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c... 25 8.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 8.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 27.9 bits (59), Expect = 1.3
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Frame = +3
Query: 96 FPGKLCEIIR*MI*KMCPIWPLHLIVLYVLALCPLWVI------CQNVPRLTA-VFSPPS 254
FPG+L +R + M P LH +++ PL I +VP LT +F +
Sbjct: 242 FPGELNSDLRKLAVNMVPFPRLHF---FMVGFAPLAAIGSSSFQAVSVPELTQQMFDANN 298
Query: 255 IIVKMEEY--KYVDVSXEGSGL----ELNDAFKISSXNEQLAWAEWNSSNLYEKHDSTWK 416
++V + +Y+ V+ G E+++ + + EW N+ + S
Sbjct: 299 MMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPP 358
Query: 417 GKIRVNGNFIGRTNLVLEV-KRDADTFS 497
++++ FIG + + E+ +R D FS
Sbjct: 359 KDLKMSATFIGNSTSIQEIFRRLGDQFS 386
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -1
Query: 445 IKFPLTRILPFHVLSCFS*RFDEFHSAQASCSXCELILNASFNSKPEPSXDTSTYLYSSI 266
++ P + +LP+ S S HSA+ +C + L SFN+ P D T +Y +
Sbjct: 90 LQSPYSLLLPYSKESLDSQEL--VHSAKQNCDVEVVYLGGSFNAFPPLQNDRITVVYMNE 147
Query: 265 LT 260
L+
Sbjct: 148 LS 149
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 375 NSSNLYEKHDSTWKGKIRVNGNFIGRTNLVL---EVKRDADTFSVTNGTVPVVI 527
NS+ L+E+H + I+ + + R EVK + D F V TVP +
Sbjct: 1340 NSTLLWERHPIAMRSAIKTHNTIMRRQLRATGGYEVKTEGDAFMVCFQTVPAAL 1393
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 382 DEFHSAQASCSXCELILNASFN---SKPEPS 299
D S++A CS C+ ++ A +N +PEPS
Sbjct: 112 DNTWSSEADCSGCKQLIEAYWNEHGGRPEPS 142
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 246 PPSIIVKMEEYKYVDVSXEGSGLELNDAFKIS 341
P ++IVK +++Y V+ E GL++ D S
Sbjct: 522 PEAVIVKNSKFRYQQVAPETFGLDILDILNAS 553
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Frame = +2
Query: 59 TTTIFKLSQS*SV-----SRKIV*NNSINDIENVSDLAI 160
+T+IF +S ++ S ++V NS++ IENVS A+
Sbjct: 76 STSIFSISDQENILERRISEEVVRENSVSSIENVSSSAV 114
>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 153 WPLHLIVLYVLALCPLWVICQNVPRLTAVFSPPSII 260
+PL+ +V +V LC L+ I + T SI+
Sbjct: 31 YPLYCVVCFVSVLCRLYCILMSAASATQTICDQSIL 66
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 6.7
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -1
Query: 592 IKAMNTATLVVNIVSMTRSTLV--ITTGTVPLVTENVSASLFTSST-KFVLPIKFPLT 428
I A + V IV T T+ IT+GT+P T AS S T + V P P T
Sbjct: 107 IPAEGITSGTVEIVEPTAGTVTETITSGTLPFTTTLAQASGTVSGTVEIVSPKNNPTT 164
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 264 KMEEYKYVDVSXEGSGLELNDAFKISSXNEQLAWA 368
+ ++YK +VS GL LND + + + L +A
Sbjct: 302 RKQQYKMFEVSFTDQGLNLNDTGTLETYSRLLLFA 336
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 6.7
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -1
Query: 592 IKAMNTATLVVNIVSMTRSTLV--ITTGTVPLVTENVSASLFTSST-KFVLPIKFPLT 428
I A + V IV T T+ IT+GT+P T AS S T + V P P T
Sbjct: 107 IPAEGITSGTVEIVEPTAGTVTETITSGTLPFTTTLAQASGTVSGTVEIVSPKNNPTT 164
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = -1
Query: 553 VSMTRSTLVITTGTVPLVTENVSASLFTSST 461
++ T ++ V ++ ++PL + N +++ FTSST
Sbjct: 625 ITGTSTSKVTSSTSIPLTSTNRTSTTFTSST 655
>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
3|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 462 VLEVKRDADTFSVTNGTVPVVITRVERVIDTIFTTSVAVFIALIFINF 605
V+E + ADT + + +P V+ V F ++A+F L+F NF
Sbjct: 54 VMEASKVADTRTAWSTKIPAVLLPV-------FVINIALFKYLVFANF 94
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 8.8
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -1
Query: 586 AMNTATLVVNIVSMTRSTLVITTGTVPLVTENVSASLFTSSTKF----VLPIKFPLTR 425
A+NT+T + + + ST + ++ V T S+S+ SST V+ P+TR
Sbjct: 533 ALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITR 590
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 586 AMNTATLVVNIVSMTRSTLVITTGTVPLVTENVSASLFTSST 461
A+NT+T + + + ST + ++ V T S+S+ SST
Sbjct: 3077 ALNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSST 3118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,156
Number of Sequences: 5004
Number of extensions: 53838
Number of successful extensions: 221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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