Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i19f
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     30   1.3  
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)                30   1.7  
SB_5416| Best HMM Match : Peptidase_S9 (HMM E-Value=3.8e-24)           30   1.7  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        27   9.3  
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)             27   9.3  
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
 Frame = +3

Query: 219 VPRLTAVFSPPSIIVKMEEYKYVDVSXEGSGLELNDAFKISSXNEQLAWAEWNSSNLYEK 398
           V R  A+F   +++ K+ + K  D   +     L+    + +  E++A    N   L +K
Sbjct: 327 VARAKAIFIWQAMMYKIGQKKNKDDILDACAYALDAQDNVLNFLEKIATVHKNFEGLNDK 386

Query: 399 HDSTWKGKIRVNGNFIGRTNLV--LEVKRDADT----FSVTNGTVPVVITRVERVI 548
            D+      R       +  +V  ++V+RDAD     F   N   P+V+++V+ V+
Sbjct: 387 MDAIDIAYARYQAFSPNKPLIVDGIDVRRDADVPCDVFESDNVVPPIVVSQVDSVV 442


>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
          Length = 296

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 204 VICQNVPRLTAVFSPPSII---VKMEEYKYVDVSXEGSG 311
           +IC+N+PRL + ++ P II      ++YK  D    G G
Sbjct: 76  IICKNIPRLVSPWTKPIIIGRHAHADQYKATDFVVPGPG 114


>SB_5416| Best HMM Match : Peptidase_S9 (HMM E-Value=3.8e-24)
          Length = 637

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 342 SXNEQLAWAEWNSSNLYEKHDSTWKGKIRVNGNFIGRTNL 461
           S +  LAW +WN  N+       W GK+   G+ + +  +
Sbjct: 189 SKHGMLAWVQWNHPNMPWDDTELWIGKLNSTGDALEKNTI 228


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +3

Query: 342 SXNEQLAWAEWNSSNLYEKHDSTWKGKIRVNGNFIG-RTNLVLEVKRDADTFSVTNGTVP 518
           S    L W  + S+  Y   + T K K+R     +  +  L+LE+++  D  ++      
Sbjct: 120 SAEHLLIWVNFTSAEEYRIENETLKRKLRKEKEKLSLKEKLILEIQKKLDVTTIAVKDRE 179

Query: 519 VVITRVERVIDTI 557
             I ++E  +  +
Sbjct: 180 TTILKLETALQDL 192


>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
          Length = 922

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 605 EIDKD*SYEHSNAGGEYRVYDPFDPRDHHGH-RTVGDGKRIGVPFYFQYQVCP 450
           E +K    E   + G+  +  PFD  DHHG  +T  D +   +  YF +  CP
Sbjct: 736 EKEKKKEKEKKRSIGKVALGGPFDLIDHHGKPKTDKDFRGKWLLLYFGFTHCP 788


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 8/37 (21%), Positives = 20/37 (54%)
 Frame = +3

Query: 330 FKISSXNEQLAWAEWNSSNLYEKHDSTWKGKIRVNGN 440
           F +S    +L W +W + +++  +  T  G++++  N
Sbjct: 397 FAVSLYGNKLYWTDWTTKSIHSCNKKTGFGRLKLQSN 433


>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 470 SKKGRRYVF-RHQRYGARGDHEGRTGHRHDIHHQR 571
           +KKGR   + RH  + + G       HR + HH+R
Sbjct: 493 NKKGRHQGYGRHDSHASHGGSVSSGRHREEYHHKR 527



 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 527 HEGRTGHRHDIHHQRCCVHSFN 592
           H  R GH HD HH    +H ++
Sbjct: 524 HHKRGGHSHDRHHHGYYIHKYD 545


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,860,610
Number of Sequences: 59808
Number of extensions: 420122
Number of successful extensions: 1072
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)