Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i19f
         (622 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   0.16 
Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL...    24   4.5  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   5.9  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.0 bits (52), Expect(2) = 0.16
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 192 CPLWVICQNVPRLTAVFS 245
           CPLW +C +  R T  F+
Sbjct: 555 CPLWPLCGSASRQTQTFT 572



 Score = 21.8 bits (44), Expect(2) = 0.16
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 138 KMCPIWPL 161
           K CP+WPL
Sbjct: 553 KACPLWPL 560


>Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL10
           protein.
          Length = 204

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 271 KNTNTSMYLLKVRAWS*MTRSKSVRXMSNWPGPNGTRRTFTKNTT 405
           K ++   YLL+VRAW     ++  R    W  P   RR   K  T
Sbjct: 14  KQSDVMRYLLRVRAWQYRQMTRFHRAPRPW-RPTRLRRLGYKAKT 57


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +3

Query: 237  VFSPPSIIVKMEEYKYVDVSXEGSGLELNDAFKISSXNEQLAWAEWNSSNLYE 395
            +FS P    ++     V+   +     L++     + ++QL+WA+W   +L E
Sbjct: 3248 IFSRPKRDQQVSHTDMVEYEKKMLYCRLDEMKTQINTHQQLSWAQWTYEDLAE 3300


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,527
Number of Sequences: 2352
Number of extensions: 13636
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60214320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)