Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i19f
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr...    31   0.81 
At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein (HS...    30   1.4  
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    30   1.4  
At1g16250.1 68414.m01946 kelch repeat-containing F-box family pr...    29   1.9  
At5g36210.1 68418.m04365 expressed protein                             29   2.5  
At3g47510.1 68416.m05167 expressed protein                             29   3.3  
At5g54745.1 68418.m06817 DegP protease family contains similarit...    28   4.3  
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    28   4.3  
At1g51150.1 68414.m05750 DegP protease family contains similarit...    28   4.3  
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS...    28   5.7  
At4g26450.1 68417.m03805 expressed protein                             27   7.6  

>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
           protein 
          Length = 571

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 371 MELVEPLRKTRQHVEGQDTR*WKFYR*DKLGTGSKKGRRYVFRHQRYGARGDHEGRTGHR 550
           M   E +R +   +    +R W+    D++ TGS +  +    +Q Y    DH+   GH 
Sbjct: 492 MVQAEHVRNSLLEITRNTSRGWQD---DQMATGSMQNEKNEVDYQHYD---DHQHHNGHH 545

Query: 551 HDIHHQ 568
           H   HQ
Sbjct: 546 HPFDHQ 551


>At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein
           (HSP17.6A-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]
          Length = 155

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 393 EKHDSTWKGKIRVNGNFIGRTNLVLEVKRDADTFSVTNGTVPVVITRVE 539
           EK D TW    R +G F  +  L   VK D    S+ NG + V + +VE
Sbjct: 93  EKQD-TWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTVPKVE 140


>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 393 EKHDSTWKGKIRVNGNFIGRTNLVLEVKRDADTFSVTNGTVPVVITRVE 539
           EK D TW    R +G F  +  L   VK D    S+ NG + V + +VE
Sbjct: 95  EKQD-TWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTVPKVE 142


>At1g16250.1 68414.m01946 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 383

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 306 SGLELNDAFKISSXNEQLAWAEWNSSNLYEKHDSTW 413
           SGL     F + S  +Q+ +AE NSS ++   D TW
Sbjct: 208 SGLSYRGCFHVLS--DQVGFAEQNSSEVFNPRDMTW 241


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 351 EQLAWAEWNSSNLYEKHDSTWKGKIRVNGN 440
           E+LAW EW+  N+       W G I   GN
Sbjct: 199 ERLAWIEWSHPNMPWDKAELWVGYISEGGN 228


>At3g47510.1 68416.m05167 expressed protein 
          Length = 85

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 159 LHLIVLYVLALCPLWVICQNVPRLTAVFSPPSIIVKMEEYKYVDVSXEGSG---LELND 326
           +HL+V++ LAL  ++    +  RL ++   P  IV+ ++   +DV  E      +ELND
Sbjct: 7   IHLLVIFFLALSHIFFFPSHASRLGSLMEKPK-IVRPQQDTLMDVKKEVEERMVMELND 64


>At5g54745.1 68418.m06817 DegP protease family contains similarity
           to DegP2 protease [Arabidopsis thaliana]
           gi|13172275|gb|AAK14061
          Length = 198

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 441 FIGRTNLVLEVKRDADTFSVTNGTVPVVITRVE 539
           FIG T   L   RD D  SVT G    ++TRVE
Sbjct: 122 FIGETIYALGYPRDGDIISVTKG----IVTRVE 150


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 393 EKHDSTWKGKIRVNGNFIGRTNLVLEVKRDADTFSVTNGTVPVVITRVE 539
           E  + TW    R +G F  R  L   VK D    ++ NG + V + + E
Sbjct: 92  EDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAE 140


>At1g51150.1 68414.m05750 DegP protease family contains similarity
           to DegP2 protease GI:13172275 from [Arabidopsis
           thaliana]
          Length = 219

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 27/89 (30%), Positives = 36/89 (40%)
 Frame = +3

Query: 273 EYKYVDVSXEGSGLELNDAFKISSXNEQLAWAEWNSSNLYEKHDSTWKGKIRVNGNFIGR 452
           ++ Y+ V   GS  +     K       LA    +S   +E  +    G I     FIG 
Sbjct: 103 DHLYLQVRKHGSPTKYKAEVKAFRYGCDLAILGIDSEEFWEDINPLELGGIP----FIGE 158

Query: 453 TNLVLEVKRDADTFSVTNGTVPVVITRVE 539
           T   L   R  DT SVT G    ++TRVE
Sbjct: 159 TVYALGYPRGGDTISVTKG----IVTRVE 183


>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
           (HSP17.4-CI) identical to 17.4 kDa class I heat shock
           protein SP:P19036 from [Arabidopsis thaliana]
          Length = 156

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 378 SSNLYEKHDSTWKGKIRVNGNFIGRTNLVLEVKRDADTFSVTNGTVPVVITRVE 539
           SS   EK D TW    R +G F+ R  L    K +    S+ NG + V + +V+
Sbjct: 91  SSENEEKSD-TWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQ 143


>At4g26450.1 68417.m03805 expressed protein
          Length = 1248

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 401 RQHVEGQDTR*WKFYR*DKLGTGSKKGRRYVFRHQRYGARGDHEGRTGHRHD 556
           +Q  E Q +R  +  R D     ++K RRY+  +   G+R   +GR  HR+D
Sbjct: 117 KQAGEFQSSRSQEEARMDVSAPAAEK-RRYIDGYSSAGSRNSLKGRRSHRYD 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,529
Number of Sequences: 28952
Number of extensions: 288912
Number of successful extensions: 710
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)