Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i17r
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823... 29 1.2
09_02_0580 + 10884012-10884081,10884173-10884419,10884472-108847... 29 1.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 1.6
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 27 4.8
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 27 6.3
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 27 6.3
07_01_1014 + 8610060-8610227,8610573-8610950,8611037-8611081 27 8.3
01_01_0421 + 3181139-3184207 27 8.3
>09_06_0206 -
21580240-21580467,21580544-21580591,21581533-21582321,
21582779-21582979
Length = 421
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 263 FLKQRTNPWKNASEAGYVFDTALQRFLSMKV 171
F+ QR W N S +DT L RF+++K+
Sbjct: 44 FVAQRKLGWGNFSTVWLAYDTLLNRFVALKI 74
>09_02_0580 +
10884012-10884081,10884173-10884419,10884472-10884735,
10885630-10886093,10888326-10888396
Length = 371
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 272 RREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSL 129
RR Q WKN S A + DT+L + + V Q V+ TSL
Sbjct: 202 RRWLRMQLDRTWKNLSTASTIKDTSLDYAVPLPVMQTAAEAVSNETSL 249
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -3
Query: 326 SDAELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQ 165
S + L +T+ RRA +RE+ KQR KN T LQ+ ++ Q
Sbjct: 148 SKSALPRAETEEERRARKKREYEKQRAEDRKNQQMMRQSQATVLQKTQQVRAAQ 201
>04_04_1197 +
31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 27.5 bits (58), Expect = 4.8
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 120 KSKQTSSL--VYG--KIFKLCYFHGQKPLQCCVENITSLRSVFP 239
KS++ SL YG + KLCY H PLQ CV S S+FP
Sbjct: 548 KSEEWKSLQQAYGIMQALKLCYDHLSNPLQQCV----SYCSLFP 587
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -3
Query: 341 NNYG-----LSDAELNLIKTQASRRAEMRREFLKQRTNPWKNA 228
NNYG L D + T +R A++ R ++ +TN +KNA
Sbjct: 328 NNYGERFERLMDRATMIFNTLLTRAAKIPRNYIIDQTNVYKNA 370
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 236 KNASEAGYVFDTALQRFLSMKVTQFEYFTVN 144
++++E GY ALQ F+ MK +E F+ +
Sbjct: 1163 RSSTERGYSKSRALQAFIEMKEVTYEKFSAS 1193
>07_01_1014 + 8610060-8610227,8610573-8610950,8611037-8611081
Length = 196
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 329 LSDAELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDT 201
L D L L K Q + ++ R F+K R P K S + FD+
Sbjct: 91 LMDRMLKL-KEQGLQGEQITRHFIKSRLAPIKERSRTAFEFDS 132
>01_01_0421 + 3181139-3184207
Length = 1022
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 159 FKLCYFHGQKPLQCCVENITSLRSVFPGVCSLFQELPSH 275
F C HG P + ++T L + C+LF E+P H
Sbjct: 422 FSNCGLHGTIPSS--IADLTKLTKLALYACNLFGEIPRH 458
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,789,132
Number of Sequences: 37544
Number of extensions: 203809
Number of successful extensions: 503
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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