Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i17f
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32670| Best HMM Match : CIMR (HMM E-Value=0)                        29   1.6  
SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.1  
SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051)                29   2.1  
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_11830| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  

>SB_32670| Best HMM Match : CIMR (HMM E-Value=0)
          Length = 1441

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 204 EAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVPMF 332
           EAGYVFD +         ++  YFT N   S + FF+ V   F
Sbjct: 616 EAGYVFDLSPLSTAKPPFSKNSYFTANSTGSGYEFFLKVCSAF 658


>SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 108  AELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQ 263
            A +N I  + + R  + R  L    +PW  +SE    F   +    S  VTQ
Sbjct: 922  ASVNFISKKTAGRLRLERSALNHSLDPWHRSSEKPRFFTRIILALPSFLVTQ 973


>SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051)
          Length = 387

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 326 GYNNNKKSKQTSSLVYGKIFKLCYFHGQKPLQCCVENITSLRSV 195
           G +  K+      L+Y  +F L      KP  CC +N+ + +SV
Sbjct: 222 GIDGEKEKFSPPVLLYESVFTLDQICSYKPPSCCHDNVKNTQSV 265


>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 111 ELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFE 269
           E + +   A + AE+R+EFL+ R+   K+  E  Y  +   Q  ++     F+
Sbjct: 178 EKDHVHNLAVQEAELRKEFLQDRSESEKSLKEEKYKLEEEFQANVASNEKNFQ 230


>SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 882

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 281 YGKIFKL-CYFHGQKPLQCCVENITSLRSVFPGVCSL 174
           YG + +L C F     L+C  EN++ LR  F  V  L
Sbjct: 669 YGNVIELRCPFGNVSELRCPYENVSELRCPFGNVSEL 705


>SB_11830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 216 VFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVPMFTF-GTLIWNERTQREQKIRSG 392
           VFDT+L  F S+    F    V +       F+++V  FT  G  IWN    ++  +RS 
Sbjct: 127 VFDTSLWIFSSLNRYLFGITRVREMRPRPKIFIVLVLSFTLSGFSIWN--GYKQPSVRSL 184

Query: 393 ELRYKD 410
           E+  K+
Sbjct: 185 EVPLKN 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,215,317
Number of Sequences: 59808
Number of extensions: 286064
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)