Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i17f
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71267-1|CAA95851.2|  172|Caenorhabditis elegans Hypothetical pr...    42   3e-04
Z74044-1|CAA98550.1|  548|Caenorhabditis elegans Hypothetical pr...    31   0.45 
Z74039-11|CAA98508.1|  548|Caenorhabditis elegans Hypothetical p...    31   0.45 
AF077307-1|AAC98095.1|  548|Caenorhabditis elegans acetyl cholin...    31   0.45 
AC084159-14|AAK39369.2|  480|Caenorhabditis elegans Hypothetical...    29   1.4  
U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U53338-1|AAA96189.2|  152|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z81524-7|CAD54142.2|  597|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81050-15|CAN86587.1|  597|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U14524-1|AAA50785.1|  461|Caenorhabditis elegans avermectin-sens...    27   7.3  
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    27   7.3  
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z71267-1|CAA95851.2|  172|Caenorhabditis elegans Hypothetical
           protein W01A8.4 protein.
          Length = 172

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 24/109 (22%), Positives = 49/109 (44%)
 Frame = +3

Query: 87  NNYGLSDAELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQF 266
           + Y LSD E   +  +   +  +++E+L++  +P     + G   D A+ R+ S  +TQ 
Sbjct: 42  HEYNLSDEEKKAVLWRYRVKEILKKEYLRREYDPHSFKYKEGVTMDPAMFRWYSADMTQA 101

Query: 267 EYFTVNKRTSLFGFFVIVVPMFTFGTLIWNERTQREQKIRSGELRYKDR 413
           E+F    RT       +    + +  L++    +  +    G+L + DR
Sbjct: 102 EFFRFTPRTVFLYVGTVFALFYIYTRLMFVPMDKSNEACLDGKLLWWDR 150


>Z74044-1|CAA98550.1|  548|Caenorhabditis elegans Hypothetical
           protein T26H10.1 protein.
          Length = 548

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +3

Query: 147 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 326
           +E+  +FL  R  P            ++++    + V +FE+F      + F  FV+   
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525

Query: 327 MFTFG 341
           + TFG
Sbjct: 526 IITFG 530


>Z74039-11|CAA98508.1|  548|Caenorhabditis elegans Hypothetical
           protein T26H10.1 protein.
          Length = 548

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +3

Query: 147 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 326
           +E+  +FL  R  P            ++++    + V +FE+F      + F  FV+   
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525

Query: 327 MFTFG 341
           + TFG
Sbjct: 526 IITFG 530


>AF077307-1|AAC98095.1|  548|Caenorhabditis elegans acetyl choline
           receptor alpha subunitDES-2 protein.
          Length = 548

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +3

Query: 147 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 326
           +E+  +FL  R  P            ++++    + V +FE+F      + F  FV+   
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525

Query: 327 MFTFG 341
           + TFG
Sbjct: 526 IITFG 530


>AC084159-14|AAK39369.2|  480|Caenorhabditis elegans Hypothetical
           protein Y73B3A.6 protein.
          Length = 480

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 254 FHGQKPLQCCVENITSL--RSVFPGVCSLFQELPSHFSTP 141
           F     +Q C++N   L  R++ PG  SL Q L  HF+ P
Sbjct: 326 FKDHATIQSCMQNGVDLTIRNIPPGTTSLIQPLDVHFNGP 365


>U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical
           protein M02D8.3 protein.
          Length = 915

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = -3

Query: 392 STANLLFTLRSLVPYQGTKC---KHGYNNNKKSKQTSSLVYGKIFKLCYFHGQKPLQCCV 222
           ++A   F  RS  P +   C    H   NN++S   ++  Y K       +  KP+   V
Sbjct: 221 TSATTGFRRRSESPIEFLGCILRNHPVLNNQRSCANAAARYNKNVPSLPLNTPKPITPVV 280

Query: 221 ENITSLRSVFPGVCSLFQELPSHFSTP 141
             IT   S   G CSL +++PS    P
Sbjct: 281 --ITECASNTNGSCSLAEDMPSALPVP 305


>U53338-1|AAA96189.2|  152|Caenorhabditis elegans Hypothetical
           protein C05E11.6 protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 20/83 (24%), Positives = 36/83 (43%)
 Frame = -3

Query: 395 LSTANLLFTLRSLVPYQGTKCKHGYNNNKKSKQTSSLVYGKIFKLCYFHGQKPLQCCVEN 216
           LS   L+  L SL     +  K   N++K+  +T       IF++   +  +   C    
Sbjct: 10  LSLLVLILVLISLTDAHASSWKSILNSDKRM-ETKQHSLESIFRVRRTYIDENENCGSHE 68

Query: 215 ITSLRSVFPGVCSLFQELPSHFS 147
           +  + ++   +C L  EL SHF+
Sbjct: 69  LEMVHTIMDRICMLCHELRSHFA 91


>Z81524-7|CAD54142.2|  597|Caenorhabditis elegans Hypothetical
           protein F32H5.7 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 270 IQTVLLSWTETFAMLCRK 217
           + T+L SWT  F +LCRK
Sbjct: 218 LATLLKSWTRPFLLLCRK 235


>Z81050-15|CAN86587.1|  597|Caenorhabditis elegans Hypothetical
           protein F32H5.7 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 270 IQTVLLSWTETFAMLCRK 217
           + T+L SWT  F +LCRK
Sbjct: 218 LATLLKSWTRPFLLLCRK 235


>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical protein
            ZK897.1 protein.
          Length = 1396

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 105  QISRSYLPYLQSITEFNRQFVMKTIWNGPIF 13
            QI  SY+ +    TE  RQ ++  IW   +F
Sbjct: 1286 QIGNSYVTFFHGCTELLRQVIIDEIWVNGLF 1316


>Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical
           protein F11A5.10 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 231 LQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVPMFTFGTLIWNERTQR 371
           +  FL++  T+ E+  ++KR  L    +  V  F F  L W+   Q+
Sbjct: 411 MNSFLNLLETKTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGQQ 457


>U14524-1|AAA50785.1|  461|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl alpha protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 231 LQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVPMFTFGTLIWNERTQR 371
           +  FL++  T+ E+  ++KR  L    +  V  F F  L W+   Q+
Sbjct: 411 MNSFLNLLETKTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGQQ 457


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 161 GVLETKNKPLEKRFGGWLCFRHSIAKVSV 247
           G++  KN  L+  FG  LCF H+IA   V
Sbjct: 30  GIVVLKNPILKNAFGA-LCFSHTIANFGV 57


>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical
           protein B0412.3 protein.
          Length = 1107

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 155 ETGVLETKNKPLEKRFGGWLCFRHSIAKVSVHE 253
           + G+L+TKN  +  R    LCF HS A  ++++
Sbjct: 273 QQGLLKTKNSVISTRGMCELCFLHSTALEAINQ 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,794,177
Number of Sequences: 27780
Number of extensions: 221255
Number of successful extensions: 675
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)