Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i17f
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.1  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   7.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.3  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 280 TVKYSNCVTFMDRN 239
           T+ YSN VTF  RN
Sbjct: 300 TIMYSNGVTFPQRN 313


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 280 TVKYSNCVTFMDRN 239
           T+ YSN VTF  RN
Sbjct: 300 TIMYSNGVTFPQRN 313


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = -3

Query: 380 LLFTLRSLVPYQGTKCKHGYNNNKKSKQTSSLVY 279
           ++ +L +   +     K+ YNNN  +     L Y
Sbjct: 81  IISSLSNRTIHNNNNYKYNYNNNNYNNNCKKLYY 114


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = -3

Query: 380 LLFTLRSLVPYQGTKCKHGYNNNKKSKQTSSLVY 279
           ++ +L +   +     K+ YNNN  +     L Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYY 114


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = -3

Query: 380 LLFTLRSLVPYQGTKCKHGYNNNKKSKQTSSLVY 279
           ++ +L +   +     K+ YNNN  +     L Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYY 114


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = -3

Query: 380 LLFTLRSLVPYQGTKCKHGYNNNKKSKQTSSLVY 279
           ++ +L +   +     K+ YNNN  +     L Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYY 114


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 299 VWIFCYCC 322
           VWI CY C
Sbjct: 183 VWILCYFC 190


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 299 VWIFCYCC 322
           VWI CY C
Sbjct: 216 VWIMCYFC 223


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 299 VWIFCYCC 322
           VWI CY C
Sbjct: 269 VWIMCYFC 276


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 356 VPYQGTKCKHGYNNNKKSKQTSSLVYGK 273
           +P  G  CK GY  + + ++ +    GK
Sbjct: 242 LPSGGCHCKPGYQADVEKQECTECPIGK 269


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/44 (20%), Positives = 19/44 (43%)
 Frame = -3

Query: 380 LLFTLRSLVPYQGTKCKHGYNNNKKSKQTSSLVYGKIFKLCYFH 249
           ++ +L +   +     K+ YNNN  +    +  Y    K  Y++
Sbjct: 314 IISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYN 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,891
Number of Sequences: 438
Number of extensions: 2840
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)